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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11941 O_BomoMSG20748_complete:A_BomoMSG_c26767_g1_i1
136bp
11942 O_BomoMSG20749_complete:A_BomoMSG_c26767_g1_i2
210bp
 non-structural_maintenance_of_chromosomes_element_3_homolog_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0030915 C Smc5-Smc6 complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0040008 P regulation of growth
11943 O_BomoMSG2074_complete:A_BomoMSG_c9994_g1_i1
290bp
 PREDICTED:_uncharacterized_protein_LOC106120359_[Papilio_xuthus]
11944 O_BomoMSG20750_complete:A_BomoMSG_c26767_g1_i2
150bp
11945 O_BomoMSG20751_complete:A_BomoMSG_c26767_g1_i2
113bp
11946 O_BomoMSG20752_complete:A_BomoMSG_c26767_g1_i3
210bp
 non-structural_maintenance_of_chromosomes_element_3_homolog_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0030915 C Smc5-Smc6 complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0040008 P regulation of growth
11947 O_BomoMSG20753_complete:A_BomoMSG_c26767_g1_i3
150bp
11948 O_BomoMSG20754_3prime_partial:A_BomoMSG_c26767_g1_i3
139bp
11949 O_BomoMSG20755_complete:A_BomoMSG_c26767_g1_i5
210bp
 non-structural_maintenance_of_chromosomes_element_3_homolog_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0030915 C Smc5-Smc6 complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0040008 P regulation of growth
11950 O_BomoMSG20756_complete:A_BomoMSG_c26767_g1_i5
150bp
11951 O_BomoMSG20757_complete:A_BomoMSG_c26767_g1_i5
113bp
11952 O_BomoMSG20758_complete:A_BomoMSG_c26767_g1_i6
210bp
 non-structural_maintenance_of_chromosomes_element_3_homolog_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0030915 C Smc5-Smc6 complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0040008 P regulation of growth
11953 O_BomoMSG20759_complete:A_BomoMSG_c26767_g1_i6
150bp
11954 O_BomoMSG2075_internal:A_BomoMSG_c10000_g1_i1
107bp
 protein_borderless_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005887 C integral component of plasma membrane
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007422 P peripheral nervous system development
GO:0007629 P flight behavior
GO:0007638 P mechanosensory behavior
GO:0008039 P synaptic target recognition
GO:0008344 P adult locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016199 P axon midline choice point recognition
GO:0019233 P sensory perception of pain
GO:0030537 P larval behavior
GO:0045467 P R7 cell development
GO:0046331 P lateral inhibition
GO:0048814 P regulation of dendrite morphogenesis
GO:0070593 P dendrite self-avoidance
GO:0098609 P cell-cell adhesion
GO:0098632 F cell-cell adhesion mediator activity
11955 O_BomoMSG20760_complete:A_BomoMSG_c26767_g1_i6
113bp
11956 O_BomoMSG20761_5prime_partial:A_BomoMSG_c26768_g1_i1
3282bp
 basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X1_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
11957 O_BomoMSG20762_complete:A_BomoMSG_c26768_g1_i1
135bp
11958 O_BomoMSG20763_complete:A_BomoMSG_c26768_g1_i1
130bp
11959 O_BomoMSG20764_complete:A_BomoMSG_c26768_g1_i1
130bp
11960 O_BomoMSG20765_complete:A_BomoMSG_c26768_g1_i1
129bp
11961 O_BomoMSG20766_complete:A_BomoMSG_c26768_g1_i1
119bp
11962 O_BomoMSG20767_complete:A_BomoMSG_c26768_g1_i1
117bp
11963 O_BomoMSG20768_complete:A_BomoMSG_c26768_g1_i1
113bp
11964 O_BomoMSG20769_5prime_partial:A_BomoMSG_c26768_g1_i2
1454bp
 basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X2_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
11965 O_BomoMSG2076_5prime_partial:A_BomoMSG_c10014_g1_i1
100bp
 PREDICTED:_uncharacterized_protein_LOC105204256_[Solenopsis_invicta]
11966 O_BomoMSG20770_complete:A_BomoMSG_c26768_g1_i2
149bp
11967 O_BomoMSG20771_complete:A_BomoMSG_c26768_g1_i2
135bp
11968 O_BomoMSG20772_complete:A_BomoMSG_c26768_g1_i2
130bp
11969 O_BomoMSG20773_complete:A_BomoMSG_c26768_g1_i2
113bp
11970 O_BomoMSG20774_3prime_partial:A_BomoMSG_c26768_g2_i1
794bp
 uncharacterized_protein_LOC101745012_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043235 C receptor complex
GO:0050750 F low-density lipoprotein particle receptor binding
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