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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11761 O_BomoMSG20586_complete:A_BomoMSG_c26724_g1_i3
108bp
11762 O_BomoMSG20587_3prime_partial:A_BomoMSG_c26724_g1_i4
553bp
 splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
11763 O_BomoMSG20588_5prime_partial:A_BomoMSG_c26724_g1_i4
213bp
11764 O_BomoMSG20589_complete:A_BomoMSG_c26724_g1_i4
161bp
11765 O_BomoMSG2058_5prime_partial:A_BomoMSG_c9951_g1_i1
160bp
 Scarface_[Operophtera_brumata]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0046872 F metal ion binding
11766 O_BomoMSG20590_complete:A_BomoMSG_c26724_g1_i4
108bp
11767 O_BomoMSG20591_5prime_partial:A_BomoMSG_c26725_g1_i1
731bp
 KDM4_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
11768 O_BomoMSG20592_complete:A_BomoMSG_c26725_g1_i2
866bp
 KDM4_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
11769 O_BomoMSG20593_5prime_partial:A_BomoMSG_c26725_g1_i3
715bp
 KDM4_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
11770 O_BomoMSG20594_5prime_partial:A_BomoMSG_c26725_g1_i4
509bp
 KDM4_isoform_X1_[Bombyx_mori]
11771 O_BomoMSG20595_5prime_partial:A_BomoMSG_c26725_g1_i5
571bp
 KDM4_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
11772 O_BomoMSG20596_5prime_partial:A_BomoMSG_c26727_g1_i1
551bp
 myoneurin_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11773 O_BomoMSG20597_complete:A_BomoMSG_c26727_g1_i1
100bp
11774 O_BomoMSG20598_complete:A_BomoMSG_c26727_g1_i2
812bp
 transcription_elongation_factor_B_polypeptide_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008023 C transcription elongation factor complex
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0070449 C elongin complex
11775 O_BomoMSG20599_complete:A_BomoMSG_c26727_g1_i2
221bp
11776 O_BomoMSG2059_internal:A_BomoMSG_c9952_g1_i1
189bp
 leucine-rich_repeat-containing_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0008022 F protein C-terminus binding
GO:0010976 P positive regulation of neuron projection development
GO:0014069 C postsynaptic density
GO:0014070 P response to organic cyclic compound
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0043005 C neuron projection
GO:0043194 C axon initial segment
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
11777 O_BomoMSG205_complete:A_BomoMSG_c933_g1_i1
238bp
 tetraspanin_E_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031226 C intrinsic component of plasma membrane
GO:0031902 C late endosome membrane
GO:0035646 P endosome to melanosome transport
GO:0042470 C melanosome
GO:0045807 P positive regulation of endocytosis
GO:0048757 P pigment granule maturation
GO:0070062 C extracellular exosome
GO:0097487 C multivesicular body, internal vesicle
GO:1900746 P regulation of vascular endothelial growth factor signaling pathway
GO:2001046 P positive regulation of integrin-mediated signaling pathway
11778 O_BomoMSG20600_complete:A_BomoMSG_c26727_g1_i2
109bp
11779 O_BomoMSG20601_complete:A_BomoMSG_c26727_g1_i4
812bp
 transcription_elongation_factor_B_polypeptide_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008023 C transcription elongation factor complex
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0070449 C elongin complex
11780 O_BomoMSG20602_complete:A_BomoMSG_c26727_g1_i4
221bp
11781 O_BomoMSG20603_complete:A_BomoMSG_c26727_g1_i4
109bp
11782 O_BomoMSG20604_5prime_partial:A_BomoMSG_c26727_g1_i6
359bp
 transcription_elongation_factor_B_polypeptide_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008023 C transcription elongation factor complex
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0070449 C elongin complex
11783 O_BomoMSG20605_complete:A_BomoMSG_c26727_g1_i6
109bp
11784 O_BomoMSG20606_5prime_partial:A_BomoMSG_c26727_g3_i1
195bp
 ras-related_protein_Rab-24_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
11785 O_BomoMSG20607_complete:A_BomoMSG_c26727_g4_i1
572bp
 heparan-alpha-glucosaminide_N-acetyltransferase_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0007041 P lysosomal transport
GO:0008152 P metabolic process
GO:0015019 F heparan-alpha-glucosaminide N-acetyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0051259 P protein complex oligomerization
11786 O_BomoMSG20608_complete:A_BomoMSG_c26727_g4_i1
126bp
11787 O_BomoMSG20609_5prime_partial:A_BomoMSG_c26727_g1_i9
551bp
 myoneurin_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11788 O_BomoMSG2060_internal:A_BomoMSG_c9954_g1_i1
154bp
 LOW_QUALITY_PROTEIN:_diacylglycerol_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004143 F diacylglycerol kinase activity
GO:0005509 F calcium ion binding
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0007205 P protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0042313 P protein kinase C deactivation
GO:0046872 F metal ion binding
11789 O_BomoMSG20610_complete:A_BomoMSG_c26727_g1_i9
142bp
11790 O_BomoMSG20611_3prime_partial:A_BomoMSG_c26728_g1_i1
443bp
 protein_SSXT_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000780 C condensed chromosome, centromeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016358 P dendrite development
GO:0016568 P chromatin organization
GO:0016604 C nuclear body
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050773 P regulation of dendrite development
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0071565 C nBAF complex
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