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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11731 O_BomoMSG20559_internal:A_BomoMSG_c26715_g1_i1
557bp
 puff-specific_protein_Bx42_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000790 C chromatin
GO:0000974 C Prp19 complex
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0035214 P eye-antennal disc development
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
11732 O_BomoMSG2055_5prime_partial:A_BomoMSG_c9943_g1_i1
254bp
 alpha-crystallin_B_chain_[Bombyx_mori]
GO:0001666 P response to hypoxia
GO:0002088 P lens development in camera-type eye
GO:0005212 F structural constituent of eye lens
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0007021 P tubulin complex assembly
GO:0007517 P muscle organ development
GO:0007568 P aging
GO:0008017 F microtubule binding
GO:0008092 F cytoskeletal protein binding
GO:0009986 C cell surface
GO:0010629 P negative regulation of gene expression
GO:0010941 P regulation of cell death
GO:0014069 C postsynaptic density
GO:0015630 C microtubule cytoskeleton
GO:0030018 C Z disc
GO:0030308 P negative regulation of cell growth
GO:0030424 C axon
GO:0031109 P microtubule polymerization or depolymerization
GO:0031430 C M band
GO:0031674 C I band
GO:0032355 P response to estradiol
GO:0032387 P negative regulation of intracellular transport
GO:0032432 C actin filament bundle
GO:0042542 P response to hydrogen peroxide
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043010 P camera-type eye development
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043197 C dendritic spine
GO:0043204 C perikaryon
GO:0043209 C myelin sheath
GO:0043292 C contractile fiber
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
GO:0051260 P protein homooligomerization
GO:0051403 P stress-activated MAPK cascade
GO:0060561 P apoptotic process involved in morphogenesis
GO:0070062 C extracellular exosome
GO:0071480 P cellular response to gamma radiation
GO:0097060 C synaptic membrane
GO:0097512 C cardiac myofibril
GO:2000378 P negative regulation of reactive oxygen species metabolic process
11733 O_BomoMSG20560_5prime_partial:A_BomoMSG_c26715_g1_i1
231bp
11734 O_BomoMSG20561_complete:A_BomoMSG_c26715_g1_i1
164bp
11735 O_BomoMSG20562_5prime_partial:A_BomoMSG_c26715_g1_i1
134bp
11736 O_BomoMSG20563_complete:A_BomoMSG_c26715_g1_i1
109bp
11737 O_BomoMSG20564_3prime_partial:A_BomoMSG_c26716_g1_i2
454bp
 microspherule_protein_1_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0002151 F G-quadruplex RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008266 F poly(U) RNA binding
GO:0010521 F telomerase inhibitor activity
GO:0015629 C actin cytoskeleton
GO:0016568 P chromatin organization
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0031011 C Ino80 complex
GO:0034046 F poly(G) binding
GO:0043204 C perikaryon
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0051974 P negative regulation of telomerase activity
GO:0071339 C MLL1 complex
GO:1904357 P negative regulation of telomere maintenance via telomere lengthening
GO:1904751 P positive regulation of protein localization to nucleolus
11738 O_BomoMSG20565_internal:A_BomoMSG_c26716_g1_i3
470bp
 microspherule_protein_1_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0002151 F G-quadruplex RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008266 F poly(U) RNA binding
GO:0010521 F telomerase inhibitor activity
GO:0015629 C actin cytoskeleton
GO:0016568 P chromatin organization
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0031011 C Ino80 complex
GO:0034046 F poly(G) binding
GO:0043204 C perikaryon
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0051974 P negative regulation of telomerase activity
GO:0071339 C MLL1 complex
GO:1904357 P negative regulation of telomere maintenance via telomere lengthening
GO:1904751 P positive regulation of protein localization to nucleolus
11739 O_BomoMSG20566_complete:A_BomoMSG_c26717_g1_i1
274bp
 rab5_GDP/GTP_exchange_factor_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0002686 P negative regulation of leukocyte migration
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006612 P protein targeting to membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016567 P protein ubiquitination
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0031982 C vesicle
GO:0033004 P negative regulation of mast cell activation
GO:0043305 P negative regulation of mast cell degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046872 F metal ion binding
GO:0048261 P negative regulation of receptor-mediated endocytosis
GO:0050728 P negative regulation of inflammatory response
GO:0055037 C recycling endosome
GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway
GO:0061630 F ubiquitin protein ligase activity
GO:1900165 P negative regulation of interleukin-6 production
GO:1900235 P negative regulation of Kit signaling pathway
11740 O_BomoMSG20567_3prime_partial:A_BomoMSG_c26717_g1_i2
168bp
 rab5_GDP/GTP_exchange_factor_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0002686 P negative regulation of leukocyte migration
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006612 P protein targeting to membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016567 P protein ubiquitination
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0031982 C vesicle
GO:0033004 P negative regulation of mast cell activation
GO:0043305 P negative regulation of mast cell degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046872 F metal ion binding
GO:0048261 P negative regulation of receptor-mediated endocytosis
GO:0050728 P negative regulation of inflammatory response
GO:0055037 C recycling endosome
GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway
GO:0061630 F ubiquitin protein ligase activity
GO:1900165 P negative regulation of interleukin-6 production
GO:1900235 P negative regulation of Kit signaling pathway
11741 O_BomoMSG20568_complete:A_BomoMSG_c26720_g1_i1
287bp
 protein_KTI12_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
11742 O_BomoMSG20569_3prime_partial:A_BomoMSG_c26722_g1_i3
192bp
 3-hydroxy-3-methylglutaryl-CoA_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004421 F hydroxymethylglutaryl-CoA synthase activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008152 P metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016126 P sterol biosynthetic process
GO:0016740 F transferase activity
11743 O_BomoMSG2056_complete:A_BomoMSG_c9943_g1_i1
112bp
11744 O_BomoMSG20570_internal:A_BomoMSG_c26722_g1_i4
200bp
 3-hydroxy-3-methylglutaryl-CoA_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004421 F hydroxymethylglutaryl-CoA synthase activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008152 P metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016126 P sterol biosynthetic process
GO:0016740 F transferase activity
11745 O_BomoMSG20571_5prime_partial:A_BomoMSG_c26723_g1_i2
205bp
 uncharacterized_protein_LOC110384665_[Helicoverpa_armigera]
11746 O_BomoMSG20572_5prime_partial:A_BomoMSG_c26723_g1_i4
114bp
 uncharacterized_protein_LOC110384665_[Helicoverpa_armigera]
11747 O_BomoMSG20573_internal:A_BomoMSG_c26723_g1_i5
113bp
 uncharacterized_protein_LOC110384665_[Helicoverpa_armigera]
11748 O_BomoMSG20574_complete:A_BomoMSG_c26723_g1_i9
221bp
 uncharacterized_protein_LOC110384665_[Helicoverpa_armigera]
11749 O_BomoMSG20575_5prime_partial:A_BomoMSG_c26723_g1_i10
210bp
 uncharacterized_protein_LOC110384665_[Helicoverpa_armigera]
11750 O_BomoMSG20576_complete:A_BomoMSG_c26723_g1_i14
177bp
 uncharacterized_protein_LOC110384665_[Helicoverpa_armigera]
11751 O_BomoMSG20577_internal:A_BomoMSG_c26724_g1_i1
488bp
 splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
11752 O_BomoMSG20578_5prime_partial:A_BomoMSG_c26724_g1_i1
213bp
11753 O_BomoMSG20579_complete:A_BomoMSG_c26724_g1_i1
161bp
11754 O_BomoMSG2057_5prime_partial:A_BomoMSG_c9951_g1_i1
161bp
11755 O_BomoMSG20580_internal:A_BomoMSG_c26724_g1_i2
291bp
 splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
11756 O_BomoMSG20581_5prime_partial:A_BomoMSG_c26724_g1_i2
213bp
11757 O_BomoMSG20582_complete:A_BomoMSG_c26724_g1_i2
161bp
11758 O_BomoMSG20583_3prime_partial:A_BomoMSG_c26724_g1_i3
553bp
 splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
11759 O_BomoMSG20584_5prime_partial:A_BomoMSG_c26724_g1_i3
213bp
11760 O_BomoMSG20585_complete:A_BomoMSG_c26724_g1_i3
161bp
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