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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1141 O_BomoMSG11027_complete:A_BomoMSG_c23059_g1_i1
123bp
1142 O_BomoMSG11028_complete:A_BomoMSG_c23061_g2_i1
491bp
 TOM1-like_protein_2_isoform_X1_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0015031 P protein transport
GO:0019901 F protein kinase binding
GO:0030276 F clathrin binding
GO:0045839 P negative regulation of mitotic nuclear division
GO:0070062 C extracellular exosome
1143 O_BomoMSG11029_complete:A_BomoMSG_c23061_g2_i1
113bp
1144 O_BomoMSG1102_internal:A_BomoMSG_c5187_g1_i1
124bp
 uncharacterized_protein_LOC101741514_[Bombyx_mori]
1145 O_BomoMSG11030_complete:A_BomoMSG_c23061_g2_i1
112bp
1146 O_BomoMSG11031_complete:A_BomoMSG_c23063_g1_i1
270bp
 exonuclease_mut-7_homolog_[Bombyx_mori]
1147 O_BomoMSG11032_5prime_partial:A_BomoMSG_c23063_g1_i2
389bp
 exonuclease_mut-7_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1148 O_BomoMSG11033_5prime_partial:A_BomoMSG_c23065_g1_i1
230bp
 queuine_tRNA-ribosyltransferase_accessory_subunit_2_[Bombyx_mori]
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008270 F zinc ion binding
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0046872 F metal ion binding
1149 O_BomoMSG11034_3prime_partial:A_BomoMSG_c23065_g1_i1
153bp
1150 O_BomoMSG11035_3prime_partial:A_BomoMSG_c23066_g1_i1
433bp
 methyltransferase-like_protein_17,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005507 F copper ion binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032259 P methylation
1151 O_BomoMSG11036_complete:A_BomoMSG_c23069_g1_i1
339bp
 uncharacterized_protein_C19orf47_homolog_[Bombyx_mori]
1152 O_BomoMSG11037_complete:A_BomoMSG_c23069_g1_i1
116bp
1153 O_BomoMSG11038_internal:A_BomoMSG_c23071_g1_i1
102bp
1154 O_BomoMSG11039_internal:A_BomoMSG_c23071_g1_i1
101bp
 titin_isoform_X1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0001012 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005876 C spindle microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007519 P skeletal muscle tissue development
GO:0007595 P lactation
GO:0007623 P circadian rhythm
GO:0008284 P positive regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0021549 P cerebellum development
GO:0030331 F estrogen receptor binding
GO:0035257 F nuclear receptor binding
GO:0042826 F histone deacetylase binding
GO:0042974 F retinoic acid receptor binding
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0044212 F transcription cis-regulatory region binding
GO:0044255 P cellular lipid metabolic process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051225 P spindle assembly
GO:0072362 P obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
GO:2000191 P regulation of fatty acid transport
1155 O_BomoMSG1103_internal:A_BomoMSG_c5193_g1_i1
260bp
 LARGE_xylosyl-_and_glucuronyltransferase_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003824 F catalytic activity
GO:0005794 C Golgi apparatus
GO:0006044 P N-acetylglucosamine metabolic process
GO:0006486 P protein glycosylation
GO:0006493 P protein O-linked glycosylation
GO:0006688 P glycosphingolipid biosynthetic process
GO:0008152 P metabolic process
GO:0008375 F acetylglucosaminyltransferase activity
GO:0009101 P glycoprotein biosynthetic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030145 F manganese ion binding
GO:0030173 C integral component of Golgi membrane
GO:0035252 F UDP-xylosyltransferase activity
GO:0035269 P protein O-linked mannosylation
GO:0042285 F xylosyltransferase activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043403 P skeletal muscle tissue regeneration
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0060538 P skeletal muscle organ development
1156 O_BomoMSG11040_internal:A_BomoMSG_c23071_g1_i2
281bp
 titin_isoform_X2_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
1157 O_BomoMSG11041_3prime_partial:A_BomoMSG_c23071_g1_i2
123bp
1158 O_BomoMSG11042_5prime_partial:A_BomoMSG_c23071_g1_i2
106bp
1159 O_BomoMSG11043_internal:A_BomoMSG_c23071_g1_i3
212bp
 titin_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016922 F nuclear receptor binding
GO:0046966 F thyroid hormone receptor binding
1160 O_BomoMSG11044_5prime_partial:A_BomoMSG_c23071_g1_i3
106bp
1161 O_BomoMSG11045_internal:A_BomoMSG_c23073_g1_i1
126bp
 survivin-1_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001890 P placenta development
GO:0004842 F ubiquitin-protein transferase activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030414 F peptidase inhibitor activity
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0042127 P regulation of cell population proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0051301 P cell division
GO:0060711 P labyrinthine layer development
GO:0060712 P spongiotrophoblast layer development
GO:0061631 F ubiquitin conjugating enzyme activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
1162 O_BomoMSG11046_internal:A_BomoMSG_c23073_g1_i2
201bp
 survivin-1_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001890 P placenta development
GO:0004842 F ubiquitin-protein transferase activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030414 F peptidase inhibitor activity
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0042127 P regulation of cell population proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0051301 P cell division
GO:0060711 P labyrinthine layer development
GO:0060712 P spongiotrophoblast layer development
GO:0061631 F ubiquitin conjugating enzyme activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
1163 O_BomoMSG11047_complete:A_BomoMSG_c23074_g1_i1
661bp
 TBC1_domain_family_member_15_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043087 P regulation of GTPase activity
GO:0070062 C extracellular exosome
GO:0090630 P activation of GTPase activity
1164 O_BomoMSG11048_complete:A_BomoMSG_c23074_g1_i1
104bp
1165 O_BomoMSG11049_complete:A_BomoMSG_c23074_g1_i1
100bp
1166 O_BomoMSG1104_internal:A_BomoMSG_c5199_g1_i1
157bp
 LOW_QUALITY_PROTEIN:_ras-responsive_element-binding_protein_1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
1167 O_BomoMSG11050_complete:A_BomoMSG_c23074_g1_i2
650bp
 TBC1_domain_family_member_15_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043087 P regulation of GTPase activity
GO:0070062 C extracellular exosome
GO:0090630 P activation of GTPase activity
1168 O_BomoMSG11051_complete:A_BomoMSG_c23074_g1_i2
104bp
1169 O_BomoMSG11052_complete:A_BomoMSG_c23074_g1_i2
100bp
1170 O_BomoMSG11053_5prime_partial:A_BomoMSG_c23074_g1_i3
258bp
 TBC1_domain_family_member_15_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043087 P regulation of GTPase activity
GO:0070062 C extracellular exosome
GO:0090630 P activation of GTPase activity
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