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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11551 O_BomoMSG20397_3prime_partial:A_BomoMSG_c26678_g1_i2
341bp
 mitochondrial_ribonuclease_P_protein_1_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
11552 O_BomoMSG20398_3prime_partial:A_BomoMSG_c26678_g1_i3
410bp
 mitochondrial_ribonuclease_P_protein_1_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
11553 O_BomoMSG20399_complete:A_BomoMSG_c26679_g1_i1
239bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
11554 O_BomoMSG2039_complete:A_BomoMSG_c9893_g1_i1
227bp
 vacuolar_ATP_synthase_subunit_E_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0033178 C proton-transporting two-sector ATPase complex, catalytic domain
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
11555 O_BomoMSG203_internal:A_BomoMSG_c874_g1_i1
118bp
 uncharacterized_protein_LOC101738570_isoform_X1_[Bombyx_mori]
11556 O_BomoMSG20400_5prime_partial:A_BomoMSG_c26679_g1_i1
142bp
11557 O_BomoMSG20401_complete:A_BomoMSG_c26679_g1_i2
239bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
11558 O_BomoMSG20402_5prime_partial:A_BomoMSG_c26679_g1_i2
142bp
11559 O_BomoMSG20403_5prime_partial:A_BomoMSG_c26679_g1_i2
116bp
11560 O_BomoMSG20404_5prime_partial:A_BomoMSG_c26679_g1_i2
104bp
 PREDICTED:_branchpoint-bridging_protein_[Plutella_xylostella]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
11561 O_BomoMSG20405_5prime_partial:A_BomoMSG_c26679_g1_i3
389bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
11562 O_BomoMSG20406_5prime_partial:A_BomoMSG_c26679_g1_i3
142bp
11563 O_BomoMSG20407_5prime_partial:A_BomoMSG_c26679_g1_i3
130bp
11564 O_BomoMSG20408_3prime_partial:A_BomoMSG_c26679_g1_i3
121bp
11565 O_BomoMSG20409_5prime_partial:A_BomoMSG_c26679_g1_i4
254bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
11566 O_BomoMSG2040_internal:A_BomoMSG_c9896_g1_i1
142bp
 ATP-binding_cassette_sub-family_G_member_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0033344 P cholesterol efflux
GO:0034041 F ABC-type sterol transporter activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
11567 O_BomoMSG20410_5prime_partial:A_BomoMSG_c26679_g1_i4
142bp
11568 O_BomoMSG20411_3prime_partial:A_BomoMSG_c26680_g1_i1
463bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
11569 O_BomoMSG20412_3prime_partial:A_BomoMSG_c26680_g1_i2
580bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
11570 O_BomoMSG20413_internal:A_BomoMSG_c26680_g1_i3
497bp
 proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
11571 O_BomoMSG20414_5prime_partial:A_BomoMSG_c26681_g1_i1
281bp
 2-oxoglutarate_and_iron-dependent_oxygenase_domain-containing_protein_3_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418 F L-ascorbic acid binding
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
11572 O_BomoMSG20415_5prime_partial:A_BomoMSG_c26681_g1_i2
290bp
 2-oxoglutarate_and_iron-dependent_oxygenase_domain-containing_protein_3_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418 F L-ascorbic acid binding
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
11573 O_BomoMSG20416_5prime_partial:A_BomoMSG_c26681_g1_i3
121bp
 2-oxoglutarate_and_iron-dependent_oxygenase_domain-containing_protein_3_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418 F L-ascorbic acid binding
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
11574 O_BomoMSG20417_complete:A_BomoMSG_c26682_g1_i1
2262bp
 uncharacterized_protein_LOC101744971_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11575 O_BomoMSG20418_complete:A_BomoMSG_c26682_g1_i1
166bp
11576 O_BomoMSG20419_complete:A_BomoMSG_c26682_g1_i1
126bp
11577 O_BomoMSG2041_complete:A_BomoMSG_c9898_g1_i1
996bp
 LOW_QUALITY_PROTEIN:_26S_proteasome_non-ATPase_regulatory_subunit_1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0004175 F endopeptidase activity
GO:0005634 C nucleus
GO:0005838 C proteasome regulatory particle
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0030234 F enzyme regulator activity
GO:0034515 C proteasome storage granule
GO:0042176 P regulation of protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050790 P regulation of catalytic activity
11578 O_BomoMSG20420_5prime_partial:A_BomoMSG_c26682_g1_i2
750bp
 neurofilament_heavy_polypeptide-like_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11579 O_BomoMSG20421_complete:A_BomoMSG_c26682_g1_i2
126bp
11580 O_BomoMSG20422_3prime_partial:A_BomoMSG_c26683_g1_i1
420bp
 actin-related_protein_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
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