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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11581 O_BomoMSG20423_5prime_partial:A_BomoMSG_c26683_g1_i1
146bp
11582 O_BomoMSG20424_complete:A_BomoMSG_c26683_g1_i2
667bp
 actin-related_protein_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
11583 O_BomoMSG20425_complete:A_BomoMSG_c26683_g1_i2
171bp
11584 O_BomoMSG20426_complete:A_BomoMSG_c26683_g1_i2
153bp
11585 O_BomoMSG20427_3prime_partial:A_BomoMSG_c26684_g1_i1
743bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
11586 O_BomoMSG20428_3prime_partial:A_BomoMSG_c26684_g1_i2
552bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
11587 O_BomoMSG20429_3prime_partial:A_BomoMSG_c26684_g1_i3
743bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
11588 O_BomoMSG2042_internal:A_BomoMSG_c9916_g1_i1
100bp
11589 O_BomoMSG20430_3prime_partial:A_BomoMSG_c26684_g1_i4
743bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
11590 O_BomoMSG20431_3prime_partial:A_BomoMSG_c26684_g1_i5
743bp
 exportin-5_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
11591 O_BomoMSG20432_complete:A_BomoMSG_c26685_g1_i2
354bp
 cAMP-dependent_protein_kinase_C1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004691 F cAMP-dependent protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005952 C cAMP-dependent protein kinase complex
GO:0006468 P protein phosphorylation
GO:0007228 P positive regulation of hh target transcription factor activity
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007448 P anterior/posterior pattern specification, imaginal disc
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007615 P anesthesia-resistant memory
GO:0007622 P rhythmic behavior
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008355 P olfactory learning
GO:0008359 P regulation of bicoid mRNA localization
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019933 P cAMP-mediated signaling
GO:0030425 C dendrite
GO:0040040 P thermosensory behavior
GO:0042981 P regulation of apoptotic process
GO:0044297 C cell body
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048749 P compound eye development
GO:0050804 P modulation of chemical synaptic transmission
11592 O_BomoMSG20433_internal:A_BomoMSG_c26686_g2_i2
347bp
 phosphatidylinositol-binding_clathrin_assembly_protein_LAP_isoform_X1_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007270 P neuron-neuron synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0031410 C cytoplasmic vesicle
GO:0042331 P phototaxis
GO:0048268 P clathrin coat assembly
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:2000370 P positive regulation of clathrin-dependent endocytosis
11593 O_BomoMSG20434_5prime_partial:A_BomoMSG_c26686_g2_i2
119bp
11594 O_BomoMSG20435_complete:A_BomoMSG_c26686_g4_i1
549bp
 nicalin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009966 P regulation of signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031648 P protein destabilization
GO:0043254 P regulation of protein-containing complex assembly
11595 O_BomoMSG20436_3prime_partial:A_BomoMSG_c26686_g2_i3
450bp
 phosphatidylinositol-binding_clathrin_assembly_protein_LAP_isoform_X1_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007270 P neuron-neuron synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0031410 C cytoplasmic vesicle
GO:0042331 P phototaxis
GO:0048268 P clathrin coat assembly
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:2000370 P positive regulation of clathrin-dependent endocytosis
11596 O_BomoMSG20437_5prime_partial:A_BomoMSG_c26686_g2_i3
119bp
11597 O_BomoMSG20438_internal:A_BomoMSG_c26686_g7_i1
114bp
11598 O_BomoMSG20439_complete:A_BomoMSG_c26686_g4_i2
549bp
 nicalin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009966 P regulation of signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031648 P protein destabilization
GO:0043254 P regulation of protein-containing complex assembly
11599 O_BomoMSG2043_internal:A_BomoMSG_c9920_g1_i1
307bp
 LOW_QUALITY_PROTEIN:_tyrosine-protein_kinase_transmembrane_receptor_Ror_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005030 F neurotrophin receptor activity
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0038179 P neurotrophin signaling pathway
11600 O_BomoMSG20440_5prime_partial:A_BomoMSG_c26686_g7_i2
210bp
 phosphatidylinositol-binding_clathrin_assembly_protein_LAP_isoform_X9_[Helicoverpa_armigera]
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0007268 P chemical synaptic transmission
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0048268 P clathrin coat assembly
GO:2000369 P regulation of clathrin-dependent endocytosis
11601 O_BomoMSG20441_5prime_partial:A_BomoMSG_c26686_g7_i2
153bp
11602 O_BomoMSG20442_internal:A_BomoMSG_c26687_g1_i1
140bp
 trafficking_protein_particle_complex_subunit_11_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
11603 O_BomoMSG20443_internal:A_BomoMSG_c26687_g1_i2
719bp
 trafficking_protein_particle_complex_subunit_11_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
11604 O_BomoMSG20444_complete:A_BomoMSG_c26687_g1_i2
104bp
11605 O_BomoMSG20445_internal:A_BomoMSG_c26687_g1_i3
262bp
 trafficking_protein_particle_complex_subunit_11_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
11606 O_BomoMSG20446_3prime_partial:A_BomoMSG_c26687_g1_i3
100bp
11607 O_BomoMSG20447_internal:A_BomoMSG_c26687_g1_i4
825bp
 trafficking_protein_particle_complex_subunit_11_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
11608 O_BomoMSG20448_complete:A_BomoMSG_c26687_g1_i4
104bp
11609 O_BomoMSG20449_internal:A_BomoMSG_c26687_g1_i5
237bp
 trafficking_protein_particle_complex_subunit_11_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
11610 O_BomoMSG2044_complete:A_BomoMSG_c9920_g1_i1
102bp
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