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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11521 O_BomoMSG2036_complete:A_BomoMSG_c9885_g1_i1
142bp
 histidine_triad_nucleotide-binding_protein_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
11522 O_BomoMSG20370_complete:A_BomoMSG_c26668_g1_i2
523bp
 carboxylesterase_CXE26_[Spodoptera_littoralis]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
11523 O_BomoMSG20371_5prime_partial:A_BomoMSG_c26668_g1_i3
304bp
 PREDICTED:_esterase_B1-like_[Amyelois_transitella]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
11524 O_BomoMSG20372_complete:A_BomoMSG_c26669_g1_i1
283bp
 mediator_of_RNA_polymerase_II_transcription_subunit_30_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
11525 O_BomoMSG20373_5prime_partial:A_BomoMSG_c26670_g1_i1
330bp
 SET_and_MYND_domain-containing_protein_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
11526 O_BomoMSG20374_5prime_partial:A_BomoMSG_c26670_g1_i2
357bp
 SET_and_MYND_domain-containing_protein_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
11527 O_BomoMSG20375_complete:A_BomoMSG_c26670_g1_i3
385bp
 SET_and_MYND_domain-containing_protein_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
11528 O_BomoMSG20376_complete:A_BomoMSG_c26670_g1_i5
249bp
 SET_and_MYND_domain-containing_protein_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
11529 O_BomoMSG20377_complete:A_BomoMSG_c26671_g1_i1
511bp
 ribosomal_RNA-processing_protein_8_[Bombyx_mori]
GO:0000183 P rDNA heterochromatin assembly
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005677 C chromatin silencing complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0033553 C rDNA heterochromatin
GO:0035064 F methylated histone binding
GO:0042149 P cellular response to glucose starvation
GO:0044822 F RNA binding
GO:0046015 P regulation of transcription by glucose
GO:0071158 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
11530 O_BomoMSG20378_internal:A_BomoMSG_c26673_g1_i1
446bp
 transcription_factor_kayak,_isoforms_D/sro_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
11531 O_BomoMSG20379_complete:A_BomoMSG_c26673_g1_i1
108bp
11532 O_BomoMSG2037_internal:A_BomoMSG_c9887_g1_i1
209bp
 transmembrane_protein_198_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0016055 P Wnt signaling pathway
GO:0031410 C cytoplasmic vesicle
11533 O_BomoMSG20380_internal:A_BomoMSG_c26673_g1_i2
378bp
 transcription_factor_kayak_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
11534 O_BomoMSG20381_complete:A_BomoMSG_c26673_g1_i2
108bp
11535 O_BomoMSG20382_internal:A_BomoMSG_c26673_g1_i3
331bp
 transcription_factor_kayak,_isoforms_D/sro_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
11536 O_BomoMSG20383_complete:A_BomoMSG_c26673_g1_i3
108bp
11537 O_BomoMSG20384_3prime_partial:A_BomoMSG_c26673_g1_i4
396bp
 transcription_factor_kayak,_isoforms_D/sro_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
11538 O_BomoMSG20385_complete:A_BomoMSG_c26673_g1_i4
108bp
11539 O_BomoMSG20386_complete:A_BomoMSG_c26674_g1_i1
409bp
 short-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
11540 O_BomoMSG20387_complete:A_BomoMSG_c26674_g1_i1
139bp
 conserved_hypothetical_protein_[Stigmatella_aurantiaca_DW4/3-1]
11541 O_BomoMSG20388_complete:A_BomoMSG_c26674_g1_i1
136bp
11542 O_BomoMSG20389_5prime_partial:A_BomoMSG_c26674_g1_i2
114bp
 short-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial_isoform_X3_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
11543 O_BomoMSG2038_internal:A_BomoMSG_c9888_g1_i1
178bp
 rho_GTPase-activating_protein_190_isoform_X3_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007415 P defasciculation of motor neuron axon
GO:0016319 P mushroom body development
GO:0030215 F semaphorin receptor binding
GO:0043547 P positive regulation of GTPase activity
GO:0045792 P negative regulation of cell size
GO:0050770 P regulation of axonogenesis
11544 O_BomoMSG20390_internal:A_BomoMSG_c26676_g1_i1
219bp
 3-oxoacyl-[acyl-carrier-protein]_synthase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006637 P acyl-CoA metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0051790 P short-chain fatty acid biosynthetic process
GO:0051792 P medium-chain fatty acid biosynthetic process
11545 O_BomoMSG20391_3prime_partial:A_BomoMSG_c26676_g1_i2
362bp
 3-oxoacyl-[acyl-carrier-protein]_synthase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006637 P acyl-CoA metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0051790 P short-chain fatty acid biosynthetic process
GO:0051792 P medium-chain fatty acid biosynthetic process
11546 O_BomoMSG20392_complete:A_BomoMSG_c26676_g1_i2
141bp
11547 O_BomoMSG20393_internal:A_BomoMSG_c26676_g1_i3
194bp
 3-oxoacyl-[acyl-carrier-protein]_synthase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006637 P acyl-CoA metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0051790 P short-chain fatty acid biosynthetic process
GO:0051792 P medium-chain fatty acid biosynthetic process
11548 O_BomoMSG20394_5prime_partial:A_BomoMSG_c26677_g1_i1
193bp
 Vps23_[Bombyx_mori]
GO:0000813 C ESCRT I complex
GO:0001558 P regulation of cell growth
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0006464 P cellular protein modification process
GO:0006513 P protein monoubiquitination
GO:0006810 P transport
GO:0006914 P autophagy
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016197 P endosomal transport
GO:0019058 P viral life cycle
GO:0030154 P cell differentiation
GO:0030216 P keratinocyte differentiation
GO:0030374 F nuclear receptor coactivator activity
GO:0031625 F ubiquitin protein ligase binding
GO:0031902 C late endosome membrane
GO:0036258 P multivesicular body assembly
GO:0039702 P viral budding via host ESCRT complex
GO:0040008 P regulation of growth
GO:0042803 F protein homodimerization activity
GO:0043130 F ubiquitin binding
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043405 P regulation of MAP kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046755 P viral budding
GO:0046790 F virion binding
GO:0048306 F calcium-dependent protein binding
GO:0048524 P positive regulation of viral process
GO:0051301 P cell division
GO:0070062 C extracellular exosome
GO:0075733 P intracellular transport of virus
GO:0097352 P autophagosome maturation
GO:1902186 P obsolete regulation of viral release from host cell
GO:1902188 P obsolete positive regulation of viral release from host cell
GO:1903543 P positive regulation of exosomal secretion
GO:1903551 P regulation of extracellular exosome assembly
GO:1903772 P regulation of viral budding via host ESCRT complex
GO:1903774 P positive regulation of viral budding via host ESCRT complex
GO:2000397 P positive regulation of ubiquitin-dependent endocytosis
11549 O_BomoMSG20395_complete:A_BomoMSG_c26677_g1_i2
399bp
 tumor_susceptibility_gene_101_protein_[Bombyx_mori]
GO:0000813 C ESCRT I complex
GO:0001558 P regulation of cell growth
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0006464 P cellular protein modification process
GO:0006513 P protein monoubiquitination
GO:0006810 P transport
GO:0006914 P autophagy
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016197 P endosomal transport
GO:0019058 P viral life cycle
GO:0030154 P cell differentiation
GO:0030216 P keratinocyte differentiation
GO:0030374 F nuclear receptor coactivator activity
GO:0031625 F ubiquitin protein ligase binding
GO:0031902 C late endosome membrane
GO:0036258 P multivesicular body assembly
GO:0039702 P viral budding via host ESCRT complex
GO:0040008 P regulation of growth
GO:0042803 F protein homodimerization activity
GO:0043130 F ubiquitin binding
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043405 P regulation of MAP kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046755 P viral budding
GO:0046790 F virion binding
GO:0048306 F calcium-dependent protein binding
GO:0048524 P positive regulation of viral process
GO:0051301 P cell division
GO:0070062 C extracellular exosome
GO:0075733 P intracellular transport of virus
GO:0097352 P autophagosome maturation
GO:1902186 P obsolete regulation of viral release from host cell
GO:1902188 P obsolete positive regulation of viral release from host cell
GO:1903543 P positive regulation of exosomal secretion
GO:1903551 P regulation of extracellular exosome assembly
GO:1903772 P regulation of viral budding via host ESCRT complex
GO:1903774 P positive regulation of viral budding via host ESCRT complex
GO:2000397 P positive regulation of ubiquitin-dependent endocytosis
11550 O_BomoMSG20396_3prime_partial:A_BomoMSG_c26678_g1_i1
341bp
 mitochondrial_ribonuclease_P_protein_1_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
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