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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11491 O_BomoMSG20342_internal:A_BomoMSG_c26658_g1_i1
384bp
 cyclin-K_[Bombyx_mori]
GO:0000307 C cyclin-dependent protein kinase holoenzyme complex
GO:0001701 P in utero embryonic development
GO:0002944 C cyclin K-CDK12 complex
GO:0002945 C cyclin K-CDK13 complex
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 F protein kinase binding
GO:0044828 P negative regulation by host of viral genome replication
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0071157 P regulation of cell cycle
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
GO:2001165 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues
11492 O_BomoMSG20343_complete:A_BomoMSG_c26659_g1_i1
693bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0046872 F metal ion binding
11493 O_BomoMSG20344_complete:A_BomoMSG_c26659_g1_i1
135bp
11494 O_BomoMSG20345_5prime_partial:A_BomoMSG_c26659_g1_i2
256bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0046872 F metal ion binding
11495 O_BomoMSG20346_complete:A_BomoMSG_c26659_g1_i3
693bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0046872 F metal ion binding
11496 O_BomoMSG20347_complete:A_BomoMSG_c26659_g1_i5
693bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0046872 F metal ion binding
11497 O_BomoMSG20348_internal:A_BomoMSG_c26660_g1_i1
136bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
11498 O_BomoMSG20349_internal:A_BomoMSG_c26660_g1_i2
435bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
11499 O_BomoMSG2034_complete:A_BomoMSG_c9875_g1_i1
100bp
11500 O_BomoMSG20350_3prime_partial:A_BomoMSG_c26662_g1_i1
587bp
 nucleolar_protein_6_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
11501 O_BomoMSG20351_internal:A_BomoMSG_c26662_g1_i2
192bp
 nucleolar_protein_6_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
11502 O_BomoMSG20352_5prime_partial:A_BomoMSG_c26663_g1_i1
740bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A_containing_DEAD/H_box_1_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0045089 P positive regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
11503 O_BomoMSG20353_complete:A_BomoMSG_c26663_g1_i1
126bp
11504 O_BomoMSG20354_complete:A_BomoMSG_c26663_g2_i1
171bp
 ras-related_protein_Ral-a_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007265 P Ras protein signal transduction
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0008152 P metabolic process
GO:0008593 P regulation of Notch signaling pathway
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0022604 P regulation of cell morphogenesis
GO:0030165 F PDZ domain binding
GO:0045087 P innate immune response
GO:0045824 P negative regulation of innate immune response
GO:0046329 P negative regulation of JNK cascade
GO:0050829 P defense response to Gram-negative bacterium
11505 O_BomoMSG20355_complete:A_BomoMSG_c26663_g2_i1
114bp
11506 O_BomoMSG20356_5prime_partial:A_BomoMSG_c26663_g1_i2
381bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A_containing_DEAD/H_box_1_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0045089 P positive regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
11507 O_BomoMSG20357_5prime_partial:A_BomoMSG_c26663_g1_i2
164bp
11508 O_BomoMSG20358_complete:A_BomoMSG_c26663_g1_i3
878bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A_containing_DEAD/H_box_1_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0045089 P positive regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
11509 O_BomoMSG20359_complete:A_BomoMSG_c26663_g1_i3
126bp
11510 O_BomoMSG2035_internal:A_BomoMSG_c9877_g1_i1
155bp
 probable_phospholipid-transporting_ATPase_IM_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
11511 O_BomoMSG20360_complete:A_BomoMSG_c26663_g2_i2
171bp
 ras-related_protein_Ral-a_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007265 P Ras protein signal transduction
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0008152 P metabolic process
GO:0008593 P regulation of Notch signaling pathway
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0022604 P regulation of cell morphogenesis
GO:0030165 F PDZ domain binding
GO:0045087 P innate immune response
GO:0045824 P negative regulation of innate immune response
GO:0046329 P negative regulation of JNK cascade
GO:0050829 P defense response to Gram-negative bacterium
11512 O_BomoMSG20361_complete:A_BomoMSG_c26663_g2_i2
114bp
11513 O_BomoMSG20362_complete:A_BomoMSG_c26664_g1_i1
327bp
 sulfotransferase_1_family_member_D1_[Bombyx_mori]
GO:0004304 F estrone sulfotransferase activity
GO:0005496 F steroid binding
GO:0005737 C cytoplasm
GO:0008146 F sulfotransferase activity
GO:0008210 P estrogen metabolic process
GO:0008289 F lipid binding
GO:0016740 F transferase activity
GO:0050294 F steroid sulfotransferase activity
11514 O_BomoMSG20363_internal:A_BomoMSG_c26664_g1_i2
206bp
 sulfotransferase_1_family_member_D1_[Bombyx_mori]
GO:0004062 F aryl sulfotransferase activity
GO:0005737 C cytoplasm
GO:0006584 P catecholamine metabolic process
GO:0006629 P lipid metabolic process
GO:0008146 F sulfotransferase activity
GO:0008202 P steroid metabolic process
GO:0016740 F transferase activity
11515 O_BomoMSG20364_internal:A_BomoMSG_c26665_g1_i1
450bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_CG7065_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
11516 O_BomoMSG20365_3prime_partial:A_BomoMSG_c26666_g1_i1
500bp
 protein_arginine_N-methyltransferase_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016740 F transferase activity
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0031397 P negative regulation of protein ubiquitination
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
11517 O_BomoMSG20366_complete:A_BomoMSG_c26667_g1_i2
652bp
 transmembrane_protein_62_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
11518 O_BomoMSG20367_5prime_partial:A_BomoMSG_c26667_g1_i3
230bp
 transmembrane_protein_62_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
11519 O_BomoMSG20368_5prime_partial:A_BomoMSG_c26667_g1_i4
246bp
 transmembrane_protein_62_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
11520 O_BomoMSG20369_5prime_partial:A_BomoMSG_c26668_g1_i1
191bp
 esterase_FE4-like_isoform_X2_[Helicoverpa_armigera]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
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