SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11371 O_BomoMSG20234_5prime_partial:A_BomoMSG_c26629_g1_i2
194bp
 SH2_domain-containing_protein_4B_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
11372 O_BomoMSG20235_complete:A_BomoMSG_c26629_g1_i2
100bp
11373 O_BomoMSG20236_5prime_partial:A_BomoMSG_c26629_g1_i3
266bp
 SH2_domain-containing_protein_4B_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
11374 O_BomoMSG20237_5prime_partial:A_BomoMSG_c26629_g1_i3
113bp
11375 O_BomoMSG20238_complete:A_BomoMSG_c26629_g1_i3
100bp
11376 O_BomoMSG20239_complete:A_BomoMSG_c26629_g1_i4
437bp
 SH2_domain-containing_protein_4B_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0010923 P negative regulation of phosphatase activity
GO:0019902 F phosphatase binding
11377 O_BomoMSG2023_5prime_partial:A_BomoMSG_c9855_g1_i1
127bp
11378 O_BomoMSG20240_5prime_partial:A_BomoMSG_c26629_g1_i4
159bp
11379 O_BomoMSG20241_complete:A_BomoMSG_c26629_g1_i4
142bp
11380 O_BomoMSG20242_complete:A_BomoMSG_c26629_g1_i4
112bp
11381 O_BomoMSG20243_complete:A_BomoMSG_c26629_g1_i4
100bp
11382 O_BomoMSG20244_5prime_partial:A_BomoMSG_c26631_g1_i1
415bp
 N-acetylglucosamine-6-phosphate_deacetylase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005975 P carbohydrate metabolic process
GO:0006044 P N-acetylglucosamine metabolic process
GO:0006046 P N-acetylglucosamine catabolic process
GO:0008150 P biological_process
GO:0008448 F N-acetylglucosamine-6-phosphate deacetylase activity
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0046872 F metal ion binding
11383 O_BomoMSG20245_5prime_partial:A_BomoMSG_c26632_g1_i1
722bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
11384 O_BomoMSG20246_3prime_partial:A_BomoMSG_c26632_g1_i1
493bp
11385 O_BomoMSG20247_complete:A_BomoMSG_c26632_g1_i1
277bp
11386 O_BomoMSG20248_5prime_partial:A_BomoMSG_c26632_g1_i3
292bp
 talin-1_[Bombyx_mori]
11387 O_BomoMSG20249_5prime_partial:A_BomoMSG_c26632_g1_i4
450bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
11388 O_BomoMSG2024_5prime_partial:A_BomoMSG_c9855_g1_i1
107bp
11389 O_BomoMSG20250_complete:A_BomoMSG_c26632_g1_i4
277bp
11390 O_BomoMSG20251_5prime_partial:A_BomoMSG_c26634_g1_i2
245bp
 ARP6_actin-related_protein_6-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006338 P chromatin remodeling
11391 O_BomoMSG20252_complete:A_BomoMSG_c26634_g1_i4
395bp
 ARP6_actin-related_protein_6-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006338 P chromatin remodeling
11392 O_BomoMSG20253_5prime_partial:A_BomoMSG_c26635_g1_i1
572bp
 PREDICTED:_probable_elongator_complex_protein_2_[Papilio_xuthus]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0010950 P positive regulation of endopeptidase activity
GO:0043248 P proteasome assembly
GO:0061133 F endopeptidase activator activity
11393 O_BomoMSG20254_complete:A_BomoMSG_c26635_g1_i1
129bp
11394 O_BomoMSG20255_complete:A_BomoMSG_c26635_g1_i1
123bp
11395 O_BomoMSG20256_3prime_partial:A_BomoMSG_c26637_g1_i1
428bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
11396 O_BomoMSG20257_internal:A_BomoMSG_c26637_g1_i2
294bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0003689 F DNA clamp loader activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0008156 P negative regulation of DNA replication
GO:0031389 C Rad17 RFC-like complex
GO:0042325 P regulation of phosphorylation
GO:1901796 P regulation of signal transduction by p53 class mediator
11397 O_BomoMSG20258_5prime_partial:A_BomoMSG_c26638_g1_i1
434bp
 conserved_oligomeric_Golgi_complex_subunit_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000916 P actomyosin contractile ring contraction
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007112 P male meiosis cytokinesis
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007290 P spermatid nucleus elongation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0030154 P cell differentiation
GO:0061024 P membrane organization
11398 O_BomoMSG20259_complete:A_BomoMSG_c26639_g1_i1
299bp
 pyridoxal_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0008478 F pyridoxal kinase activity
GO:0009443 P pyridoxal 5'-phosphate salvage
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0030955 F potassium ion binding
GO:0031402 F sodium ion binding
GO:0031403 F lithium ion binding
GO:0042803 F protein homodimerization activity
GO:0042816 P vitamin B6 metabolic process
GO:0042823 P pyridoxal phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
11399 O_BomoMSG2025_3prime_partial:A_BomoMSG_c9855_g1_i2
284bp
 MICOS_complex_subunit_Mic60_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022008 P neurogenesis
GO:0070584 P mitochondrion morphogenesis
11400 O_BomoMSG20260_5prime_partial:A_BomoMSG_c26639_g1_i4
284bp
 pyridoxal_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0008478 F pyridoxal kinase activity
GO:0009443 P pyridoxal 5'-phosphate salvage
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0030955 F potassium ion binding
GO:0031402 F sodium ion binding
GO:0031403 F lithium ion binding
GO:0042803 F protein homodimerization activity
GO:0042816 P vitamin B6 metabolic process
GO:0042823 P pyridoxal phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
previous next from show/29137

- SilkBase 1999-2023 -