SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11191 O_BomoMSG20072_5prime_partial:A_BomoMSG_c26588_g4_i1
120bp
11192 O_BomoMSG20073_complete:A_BomoMSG_c26589_g1_i1
277bp
 myoneurin-like_[Bombyx_mori]
GO:0001223 F transcription coactivator binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
11193 O_BomoMSG20074_5prime_partial:A_BomoMSG_c26589_g1_i2
114bp
 myoneurin-like_[Bombyx_mori]
GO:0001223 F transcription coactivator binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
11194 O_BomoMSG20075_internal:A_BomoMSG_c26590_g1_i1
2255bp
 LOW_QUALITY_PROTEIN:_CAD_protein_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004070 F aspartate carbamoyltransferase activity
GO:0004087 F carbamoyl-phosphate synthase (ammonia) activity
GO:0004088 F carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151 F dihydroorotase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0006520 P cellular amino acid metabolic process
GO:0006526 P arginine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0008152 P metabolic process
GO:0016597 F amino acid binding
GO:0016740 F transferase activity
GO:0016743 F carboxyl- or carbamoyltransferase activity
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016812 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GO:0016874 F ligase activity
GO:0044205 P 'de novo' UMP biosynthetic process
GO:0046872 F metal ion binding
GO:0070406 F glutamine binding
11195 O_BomoMSG20076_complete:A_BomoMSG_c26590_g1_i1
109bp
 Uncharacterised_protein_[Bordetella_pertussis]
11196 O_BomoMSG20077_internal:A_BomoMSG_c26590_g1_i2
541bp
 LOW_QUALITY_PROTEIN:_CAD_protein_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004070 F aspartate carbamoyltransferase activity
GO:0004087 F carbamoyl-phosphate synthase (ammonia) activity
GO:0004088 F carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151 F dihydroorotase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0006520 P cellular amino acid metabolic process
GO:0006526 P arginine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0008152 P metabolic process
GO:0016597 F amino acid binding
GO:0016740 F transferase activity
GO:0016743 F carboxyl- or carbamoyltransferase activity
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016812 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GO:0016874 F ligase activity
GO:0044205 P 'de novo' UMP biosynthetic process
GO:0046872 F metal ion binding
GO:0070406 F glutamine binding
11197 O_BomoMSG20078_complete:A_BomoMSG_c26592_g1_i1
303bp
 glutamyl-tRNA_amidotransferase_subunit_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0016874 F ligase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
11198 O_BomoMSG20079_complete:A_BomoMSG_c26592_g1_i1
136bp
 hypothetical_protein_AUI10_04175_[Actinobacteria_bacterium_13_2_20CM_2_72_6]
11199 O_BomoMSG2007_internal:A_BomoMSG_c9791_g1_i1
106bp
 pol_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
11200 O_BomoMSG20080_3prime_partial:A_BomoMSG_c26592_g1_i2
429bp
 glutamyl-tRNA_amidotransferase_subunit_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0016874 F ligase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
11201 O_BomoMSG20081_complete:A_BomoMSG_c26592_g1_i2
136bp
 hypothetical_protein_AUI10_04175_[Actinobacteria_bacterium_13_2_20CM_2_72_6]
11202 O_BomoMSG20082_3prime_partial:A_BomoMSG_c26592_g1_i3
305bp
 glutamyl-tRNA_amidotransferase_subunit_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0016874 F ligase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
11203 O_BomoMSG20083_complete:A_BomoMSG_c26592_g1_i3
136bp
 hypothetical_protein_AUI10_04175_[Actinobacteria_bacterium_13_2_20CM_2_72_6]
11204 O_BomoMSG20084_5prime_partial:A_BomoMSG_c26592_g1_i4
135bp
 glutamyl-tRNA_amidotransferase_subunit_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0016874 F ligase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
11205 O_BomoMSG20085_internal:A_BomoMSG_c26593_g1_i1
577bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
11206 O_BomoMSG20086_complete:A_BomoMSG_c26593_g1_i1
112bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP22,_putative_(PRP22)_[Plasmodium_ovale_wallikeri]
11207 O_BomoMSG20087_internal:A_BomoMSG_c26593_g1_i2
826bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
11208 O_BomoMSG20088_complete:A_BomoMSG_c26593_g1_i2
112bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP22,_putative_(PRP22)_[Plasmodium_ovale_wallikeri]
11209 O_BomoMSG20089_3prime_partial:A_BomoMSG_c26593_g1_i3
838bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
11210 O_BomoMSG2008_internal:A_BomoMSG_c9800_g1_i1
102bp
 Chain_B,_Sp2-sp3_-_A_Complex_Of_Two_Storage_Proteins_From_Bombyx_Mori_Hemolymph
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
11211 O_BomoMSG20090_complete:A_BomoMSG_c26593_g1_i3
112bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP22,_putative_(PRP22)_[Plasmodium_ovale_wallikeri]
11212 O_BomoMSG20091_internal:A_BomoMSG_c26593_g1_i4
457bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
11213 O_BomoMSG20092_complete:A_BomoMSG_c26593_g1_i4
112bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP22,_putative_(PRP22)_[Plasmodium_ovale_wallikeri]
11214 O_BomoMSG20093_internal:A_BomoMSG_c26593_g1_i5
800bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
11215 O_BomoMSG20094_complete:A_BomoMSG_c26593_g1_i5
112bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP22,_putative_(PRP22)_[Plasmodium_ovale_wallikeri]
11216 O_BomoMSG20095_3prime_partial:A_BomoMSG_c26594_g1_i1
339bp
 protein_FAM98A_[Bombyx_mori]
GO:0044822 F RNA binding
GO:0072669 C tRNA-splicing ligase complex
11217 O_BomoMSG20096_complete:A_BomoMSG_c26595_g1_i1
305bp
 protein_phosphatase_PTC7_homolog_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0006470 P protein dephosphorylation
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
11218 O_BomoMSG20097_3prime_partial:A_BomoMSG_c26596_g1_i1
521bp
 catenin_alpha_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005913 C adherens junction
GO:0005914 C spot adherens junction
GO:0005915 C zonula adherens
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007293 P germarium-derived egg chamber formation
GO:0008092 F cytoskeletal protein binding
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016342 C catenin complex
GO:0030054 C cell junction
GO:0030055 C cell-substrate junction
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0034332 P adherens junction organization
GO:0045296 F cadherin binding
GO:0051015 F actin filament binding
GO:0060323 P head morphogenesis
GO:0060429 P epithelium development
11219 O_BomoMSG20098_complete:A_BomoMSG_c26596_g1_i1
260bp
11220 O_BomoMSG20099_complete:A_BomoMSG_c26596_g1_i1
221bp
previous next from show/29137

- SilkBase 1999-2023 -