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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11101 O_BomoMSG19993_internal:A_BomoMSG_c26569_g1_i2
554bp
 fanconi-associated_nuclease_1_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0004528 F phosphodiesterase I activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0017108 F 5'-flap endonuclease activity
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0036297 P interstrand cross-link repair
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0070336 F flap-structured DNA binding
11102 O_BomoMSG19994_internal:A_BomoMSG_c26569_g1_i3
366bp
 fanconi-associated_nuclease_1_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0004528 F phosphodiesterase I activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0017108 F 5'-flap endonuclease activity
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0036297 P interstrand cross-link repair
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0070336 F flap-structured DNA binding
11103 O_BomoMSG19995_internal:A_BomoMSG_c26569_g1_i4
111bp
 fanconi-associated_nuclease_1_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0004528 F phosphodiesterase I activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0017108 F 5'-flap endonuclease activity
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0036297 P interstrand cross-link repair
GO:0043130 F ubiquitin binding
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
GO:0070336 F flap-structured DNA binding
11104 O_BomoMSG19996_internal:A_BomoMSG_c26570_g1_i1
616bp
 integrin_alpha-PS1_precursor_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007432 P salivary gland boundary specification
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0030154 P cell differentiation
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0046982 F protein heterodimerization activity
GO:0048567 P ectodermal digestive tract morphogenesis
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
11105 O_BomoMSG19997_internal:A_BomoMSG_c26570_g1_i2
436bp
 integrin_alpha-PS1_precursor_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007432 P salivary gland boundary specification
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0030154 P cell differentiation
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0046982 F protein heterodimerization activity
GO:0048567 P ectodermal digestive tract morphogenesis
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
11106 O_BomoMSG19998_3prime_partial:A_BomoMSG_c26571_g1_i1
272bp
 WD_repeat-containing_protein_91_isoform_X1_[Bombyx_mori]
11107 O_BomoMSG19999_3prime_partial:A_BomoMSG_c26571_g1_i2
222bp
 WD_repeat-containing_protein_91_isoform_X2_[Bombyx_mori]
11108 O_BomoMSG1999_5prime_partial:A_BomoMSG_c9745_g1_i1
110bp
 serine/threonine-protein_kinase_Genghis_Khan_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0008039 P synaptic target recognition
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008154 P actin polymerization or depolymerization
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030833 P regulation of actin filament polymerization
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
11109 O_BomoMSG199_5prime_partial:A_BomoMSG_c863_g1_i1
240bp
 PREDICTED:_resistance_to_inhibitors_of_cholinesterase_protein_3_isoform_X3_[Papilio_machaon]
11110 O_BomoMSG19_internal:A_BomoMSG_c126_g1_i1
138bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
11111 O_BomoMSG1_internal:A_BomoMSG_c51_g1_i1
131bp
 regulatory-associated_protein_of_TOR_[Bombyx_mori]
GO:0001030 F RNA polymerase III type 1 promoter sequence-specific DNA binding
GO:0001031 F RNA polymerase III type 2 promoter sequence-specific DNA binding
GO:0001032 F RNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0001156 F TFIIIC-class transcription factor complex binding
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0008361 P regulation of cell size
GO:0016049 P cell growth
GO:0019901 F protein kinase binding
GO:0031669 P cellular response to nutrient levels
GO:0031929 P TOR signaling
GO:0031931 C TORC1 complex
GO:0032008 P positive regulation of TOR signaling
GO:0032403 F protein-containing complex binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045945 P positive regulation of transcription by RNA polymerase III
GO:0046676 P negative regulation of insulin secretion
GO:0071230 P cellular response to amino acid stimulus
GO:0071889 F 14-3-3 protein binding
GO:0071902 P positive regulation of protein serine/threonine kinase activity
11112 O_BomoMSG20000_3prime_partial:A_BomoMSG_c26571_g1_i3
272bp
 WD_repeat-containing_protein_91_isoform_X1_[Bombyx_mori]
11113 O_BomoMSG20001_complete:A_BomoMSG_c26572_g1_i2
244bp
 RING_finger_protein_145_isoform_X3_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
11114 O_BomoMSG20002_complete:A_BomoMSG_c26573_g1_i2
192bp
 probable_oligoribonuclease_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005925 C focal adhesion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
11115 O_BomoMSG20003_5prime_partial:A_BomoMSG_c26573_g1_i3
201bp
 probable_oligoribonuclease_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005925 C focal adhesion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
11116 O_BomoMSG20004_5prime_partial:A_BomoMSG_c26574_g1_i1
668bp
 polycomb_protein_Pcl_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007379 P segment specification
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0019827 P stem cell population maintenance
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048863 P stem cell differentiation
GO:0061086 P negative regulation of histone H3-K27 methylation
GO:0061087 P positive regulation of histone H3-K27 methylation
11117 O_BomoMSG20005_5prime_partial:A_BomoMSG_c26574_g1_i1
128bp
11118 O_BomoMSG20006_5prime_partial:A_BomoMSG_c26574_g1_i2
437bp
 polycomb_protein_Pcl_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007419 P ventral cord development
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0022008 P neurogenesis
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0050832 P defense response to fungus
11119 O_BomoMSG20007_complete:A_BomoMSG_c26574_g2_i1
221bp
 polycomb_protein_Pcl_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007379 P segment specification
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0019827 P stem cell population maintenance
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048863 P stem cell differentiation
GO:0061086 P negative regulation of histone H3-K27 methylation
GO:0061087 P positive regulation of histone H3-K27 methylation
11120 O_BomoMSG20008_3prime_partial:A_BomoMSG_c26574_g2_i2
114bp
 polycomb_protein_Pcl_[Bombyx_mori]
11121 O_BomoMSG20009_5prime_partial:A_BomoMSG_c26574_g2_i3
156bp
 polycomb_protein_Pcl_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007379 P segment specification
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0019827 P stem cell population maintenance
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048863 P stem cell differentiation
GO:0061086 P negative regulation of histone H3-K27 methylation
GO:0061087 P positive regulation of histone H3-K27 methylation
11122 O_BomoMSG2000_complete:A_BomoMSG_c9757_g1_i1
257bp
 low_molecular_mass_30_kDa_lipoprotein_21G1-like_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
11123 O_BomoMSG20010_5prime_partial:A_BomoMSG_c26574_g1_i3
161bp
 polycomb_protein_Pcl_[Bombyx_mori]
11124 O_BomoMSG20011_3prime_partial:A_BomoMSG_c26575_g1_i1
302bp
 PREDICTED:_uncharacterized_protein_LOC106130647_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0008289 F lipid binding
GO:0009838 P abscission
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032466 P negative regulation of cytokinesis
GO:0046872 F metal ion binding
GO:0051301 P cell division
11125 O_BomoMSG20012_complete:A_BomoMSG_c26575_g1_i1
166bp
11126 O_BomoMSG20013_internal:A_BomoMSG_c26575_g1_i2
285bp
 PREDICTED:_uncharacterized_protein_LOC106130647_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0008289 F lipid binding
GO:0009838 P abscission
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032466 P negative regulation of cytokinesis
GO:0046872 F metal ion binding
GO:0051301 P cell division
11127 O_BomoMSG20014_complete:A_BomoMSG_c26575_g1_i2
166bp
11128 O_BomoMSG20015_complete:A_BomoMSG_c26575_g1_i3
155bp
 PREDICTED:_uncharacterized_protein_LOC106130647_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0008289 F lipid binding
GO:0009838 P abscission
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032466 P negative regulation of cytokinesis
GO:0046872 F metal ion binding
GO:0051301 P cell division
11129 O_BomoMSG20016_complete:A_BomoMSG_c26575_g1_i3
137bp
11130 O_BomoMSG20017_3prime_partial:A_BomoMSG_c26575_g1_i3
131bp
 PREDICTED:_uncharacterized_protein_LOC106130647_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0008289 F lipid binding
GO:0009838 P abscission
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032466 P negative regulation of cytokinesis
GO:0046872 F metal ion binding
GO:0051301 P cell division
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