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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10741 O_BomoMSG19669_5prime_partial:A_BomoMSG_c26491_g1_i2
745bp
 solute_carrier_organic_anion_transporter_family_member_5A1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043252 P sodium-independent organic anion transport
10742 O_BomoMSG1966_3prime_partial:A_BomoMSG_c9606_g1_i1
165bp
 DNA_polymerase_zeta_catalytic_subunit_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016035 C zeta DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10743 O_BomoMSG19670_complete:A_BomoMSG_c26491_g1_i2
176bp
10744 O_BomoMSG19671_complete:A_BomoMSG_c26491_g1_i2
170bp
10745 O_BomoMSG19672_complete:A_BomoMSG_c26491_g1_i3
996bp
 solute_carrier_organic_anion_transporter_family_member_5A1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043252 P sodium-independent organic anion transport
10746 O_BomoMSG19673_complete:A_BomoMSG_c26491_g1_i3
176bp
10747 O_BomoMSG19674_complete:A_BomoMSG_c26491_g1_i3
170bp
10748 O_BomoMSG19675_complete:A_BomoMSG_c26492_g1_i1
135bp
 piggyBac_transposable_element-derived_protein_4-like_[Helicoverpa_armigera]
10749 O_BomoMSG19676_complete:A_BomoMSG_c26492_g1_i1
134bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X2_[Papilio_polytes]
10750 O_BomoMSG19677_complete:A_BomoMSG_c26492_g1_i2
135bp
 piggyBac_transposable_element-derived_protein_4-like_[Helicoverpa_armigera]
10751 O_BomoMSG19678_complete:A_BomoMSG_c26492_g1_i2
134bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X2_[Papilio_polytes]
10752 O_BomoMSG19679_complete:A_BomoMSG_c26492_g1_i3
135bp
 piggyBac_transposable_element-derived_protein_4-like_[Helicoverpa_armigera]
10753 O_BomoMSG1967_internal:A_BomoMSG_c9623_g1_i1
125bp
 liprin-beta-1_isoform_X13_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
10754 O_BomoMSG19680_complete:A_BomoMSG_c26492_g1_i3
134bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X2_[Papilio_polytes]
10755 O_BomoMSG19681_5prime_partial:A_BomoMSG_c26493_g1_i1
354bp
 cleavage_stimulation_factor_subunit_2_tau_variant_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0071920 C cleavage body
GO:0098789 P pre-mRNA cleavage required for polyadenylation
10756 O_BomoMSG19682_complete:A_BomoMSG_c26493_g1_i1
111bp
10757 O_BomoMSG19683_5prime_partial:A_BomoMSG_c26493_g1_i2
332bp
 cleavage_stimulation_factor_subunit_2_tau_variant_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0071920 C cleavage body
GO:0098789 P pre-mRNA cleavage required for polyadenylation
10758 O_BomoMSG19684_complete:A_BomoMSG_c26493_g1_i2
111bp
10759 O_BomoMSG19685_5prime_partial:A_BomoMSG_c26493_g1_i3
159bp
 cleavage_stimulation_factor_subunit_2_tau_variant_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0098789 P pre-mRNA cleavage required for polyadenylation
10760 O_BomoMSG19686_5prime_partial:A_BomoMSG_c26493_g1_i3
122bp
10761 O_BomoMSG19687_internal:A_BomoMSG_c26494_g1_i1
491bp
 dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:2000171 P negative regulation of dendrite development
10762 O_BomoMSG19688_internal:A_BomoMSG_c26494_g1_i2
290bp
 dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:2000171 P negative regulation of dendrite development
10763 O_BomoMSG19689_internal:A_BomoMSG_c26494_g1_i3
364bp
 dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:2000171 P negative regulation of dendrite development
10764 O_BomoMSG1968_5prime_partial:A_BomoMSG_c9623_g1_i1
111bp
10765 O_BomoMSG19690_internal:A_BomoMSG_c26494_g1_i4
211bp
 dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:2000171 P negative regulation of dendrite development
10766 O_BomoMSG19691_3prime_partial:A_BomoMSG_c26495_g1_i1
541bp
 parafibromin_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000784 C chromosome, telomeric region
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006378 P mRNA polyadenylation
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0010390 P histone monoubiquitination
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0019827 P stem cell population maintenance
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0031442 P positive regulation of mRNA 3'-end processing
GO:0031648 P protein destabilization
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0071222 P cellular response to lipopolysaccharide
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
10767 O_BomoMSG19692_5prime_partial:A_BomoMSG_c26497_g1_i1
450bp
 pleiotropic_regulator_1_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
10768 O_BomoMSG19693_5prime_partial:A_BomoMSG_c26497_g1_i1
269bp
10769 O_BomoMSG19694_3prime_partial:A_BomoMSG_c26497_g1_i1
144bp
10770 O_BomoMSG19695_complete:A_BomoMSG_c26497_g1_i1
109bp
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