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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10771 O_BomoMSG19696_internal:A_BomoMSG_c26497_g1_i2
184bp
 pleiotropic_regulator_1_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
10772 O_BomoMSG19697_5prime_partial:A_BomoMSG_c26497_g1_i2
148bp
10773 O_BomoMSG19698_complete:A_BomoMSG_c26497_g1_i2
109bp
10774 O_BomoMSG19699_complete:A_BomoMSG_c26498_g1_i1
152bp
 mucin-5AC-like_isoform_X2_[Bombyx_mori]
10775 O_BomoMSG1969_internal:A_BomoMSG_c9628_g1_i1
102bp
 cholinesterase_1_[Bombyx_mori]
10776 O_BomoMSG196_internal:A_BomoMSG_c849_g1_i2
165bp
 palmitoyltransferase_Hip14_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0007165 P signal transduction
GO:0008270 F zinc ion binding
GO:0015095 F magnesium ion transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0030660 C Golgi-associated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042802 F identical protein binding
GO:0042953 P lipoprotein transport
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:1903830 P magnesium ion transmembrane transport
10777 O_BomoMSG19700_complete:A_BomoMSG_c26498_g1_i1
120bp
 peptidoglycan-binding_protein_LysM_[Geobacillus_stearothermophilus]
10778 O_BomoMSG19701_3prime_partial:A_BomoMSG_c26498_g1_i2
105bp
 hCG1806822_[Homo_sapiens]
10779 O_BomoMSG19702_5prime_partial:A_BomoMSG_c26498_g1_i2
103bp
10780 O_BomoMSG19703_5prime_partial:A_BomoMSG_c26498_g1_i2
102bp
 mucin-5AC-like_isoform_X1_[Bombyx_mori]
10781 O_BomoMSG19704_5prime_partial:A_BomoMSG_c26498_g2_i1
1030bp
 argonaute_2_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004521 F endoribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007279 P pole cell formation
GO:0007349 P cellularization
GO:0007367 P segment polarity determination
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0010526 P negative regulation of transposition, RNA-mediated
GO:0016032 P viral process
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0033227 P dsRNA transport
GO:0035071 P salivary gland cell autophagic cell death
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035190 P syncytial nuclear migration
GO:0035195 P gene silencing by miRNA
GO:0035197 F siRNA binding
GO:0045071 P negative regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0048102 P autophagic cell death
GO:0051607 P defense response to virus
GO:0070578 C RISC-loading complex
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0098586 P cellular response to virus
10782 O_BomoMSG19705_complete:A_BomoMSG_c26498_g2_i1
200bp
10783 O_BomoMSG19706_complete:A_BomoMSG_c26498_g2_i2
1039bp
 argonaute_2_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004521 F endoribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007279 P pole cell formation
GO:0007349 P cellularization
GO:0007367 P segment polarity determination
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0010526 P negative regulation of transposition, RNA-mediated
GO:0016032 P viral process
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0033227 P dsRNA transport
GO:0035071 P salivary gland cell autophagic cell death
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035190 P syncytial nuclear migration
GO:0035195 P gene silencing by miRNA
GO:0035197 F siRNA binding
GO:0045071 P negative regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0048102 P autophagic cell death
GO:0051607 P defense response to virus
GO:0070578 C RISC-loading complex
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0098586 P cellular response to virus
10784 O_BomoMSG19707_complete:A_BomoMSG_c26498_g2_i2
200bp
10785 O_BomoMSG19708_internal:A_BomoMSG_c26499_g1_i1
299bp
 proteasome_activator_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
10786 O_BomoMSG19709_3prime_partial:A_BomoMSG_c26499_g1_i1
185bp
10787 O_BomoMSG1970_internal:A_BomoMSG_c9631_g1_i1
201bp
 uncharacterized_protein_LOC101738884_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0055072 P iron ion homeostasis
10788 O_BomoMSG19710_5prime_partial:A_BomoMSG_c26499_g1_i1
103bp
10789 O_BomoMSG19711_internal:A_BomoMSG_c26499_g2_i1
559bp
 proteasome_activator_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
10790 O_BomoMSG19712_5prime_partial:A_BomoMSG_c26499_g2_i1
139bp
10791 O_BomoMSG19713_complete:A_BomoMSG_c26499_g2_i1
131bp
10792 O_BomoMSG19714_internal:A_BomoMSG_c26499_g2_i2
535bp
 proteasome_activator_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
10793 O_BomoMSG19715_5prime_partial:A_BomoMSG_c26499_g2_i2
139bp
10794 O_BomoMSG19716_complete:A_BomoMSG_c26499_g2_i2
131bp
10795 O_BomoMSG19717_internal:A_BomoMSG_c26499_g2_i3
588bp
 proteasome_activator_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
10796 O_BomoMSG19718_5prime_partial:A_BomoMSG_c26499_g2_i3
139bp
10797 O_BomoMSG19719_complete:A_BomoMSG_c26499_g2_i3
131bp
10798 O_BomoMSG1971_internal:A_BomoMSG_c9631_g1_i1
201bp
10799 O_BomoMSG19720_3prime_partial:A_BomoMSG_c26500_g1_i1
512bp
 protein_diaphanous_isoform_X3_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0000915 P actomyosin contractile ring assembly
GO:0003383 P apical constriction
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005912 C adherens junction
GO:0005938 C cell cortex
GO:0007015 P actin filament organization
GO:0007049 P cell cycle
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007279 P pole cell formation
GO:0007283 P spermatogenesis
GO:0007349 P cellularization
GO:0007424 P open tracheal system development
GO:0007605 P sensory perception of sound
GO:0008104 P protein localization
GO:0009306 P protein secretion
GO:0012506 C vesicle membrane
GO:0016043 P cellular component organization
GO:0016324 C apical plasma membrane
GO:0016476 P regulation of embryonic cell shape
GO:0017048 F small GTPase binding
GO:0022008 P neurogenesis
GO:0030036 P actin cytoskeleton organization
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030838 P positive regulation of actin filament polymerization
GO:0031532 P actin cytoskeleton reorganization
GO:0032154 C cleavage furrow
GO:0032507 P maintenance of protein location in cell
GO:0035011 P melanotic encapsulation of foreign target
GO:0035230 C cytoneme
GO:0043234 C protein-containing complex
GO:0045010 P actin nucleation
GO:0045177 C apical part of cell
GO:0045448 P mitotic cell cycle, embryonic
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051489 P regulation of filopodium assembly
GO:0090303 P positive regulation of wound healing
GO:0097320 P plasma membrane tubulation
10800 O_BomoMSG19721_5prime_partial:A_BomoMSG_c26500_g1_i1
277bp
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