SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10441 O_BomoMSG19399_5prime_partial:A_BomoMSG_c26427_g1_i3
351bp
 protein_AATF_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006357 P regulation of transcription by RNA polymerase II
10442 O_BomoMSG1939_5prime_partial:A_BomoMSG_c9483_g1_i1
194bp
10443 O_BomoMSG193_5prime_partial:A_BomoMSG_c846_g1_i1
101bp
10444 O_BomoMSG19400_complete:A_BomoMSG_c26428_g1_i1
204bp
 protein_preli-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0015914 P phospholipid transport
GO:0030061 C mitochondrial crista
GO:0048813 P dendrite morphogenesis
GO:0070584 P mitochondrion morphogenesis
GO:1990050 F phosphatidic acid transfer activity
10445 O_BomoMSG19401_complete:A_BomoMSG_c26428_g1_i1
137bp
10446 O_BomoMSG19402_complete:A_BomoMSG_c26428_g1_i1
125bp
10447 O_BomoMSG19403_complete:A_BomoMSG_c26429_g1_i1
892bp
 F-BAR_domain_only_protein_2-like_[Bombyx_mori]
GO:0001786 F phosphatidylserine binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0010324 P membrane invagination
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0035091 F phosphatidylinositol binding
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0072659 P protein localization to plasma membrane
10448 O_BomoMSG19404_5prime_partial:A_BomoMSG_c26429_g1_i3
645bp
 F-BAR_domain_only_protein_2-like_[Bombyx_mori]
GO:0001786 F phosphatidylserine binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0010324 P membrane invagination
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0035091 F phosphatidylinositol binding
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0072659 P protein localization to plasma membrane
10449 O_BomoMSG19405_5prime_partial:A_BomoMSG_c26429_g1_i4
620bp
 F-BAR_domain_only_protein_2-like_[Bombyx_mori]
GO:0001786 F phosphatidylserine binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0010324 P membrane invagination
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0035091 F phosphatidylinositol binding
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0072659 P protein localization to plasma membrane
10450 O_BomoMSG19406_3prime_partial:A_BomoMSG_c26430_g1_i1
361bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10451 O_BomoMSG19407_3prime_partial:A_BomoMSG_c26430_g1_i2
186bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10452 O_BomoMSG19408_internal:A_BomoMSG_c26430_g1_i3
266bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10453 O_BomoMSG19409_internal:A_BomoMSG_c26430_g1_i4
298bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10454 O_BomoMSG1940_5prime_partial:A_BomoMSG_c9483_g1_i1
176bp
 eukaryotic_translation_initiation_factor_4_gamma_2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0016281 C eukaryotic translation initiation factor 4F complex
10455 O_BomoMSG19410_3prime_partial:A_BomoMSG_c26430_g1_i5
622bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10456 O_BomoMSG19411_internal:A_BomoMSG_c26430_g1_i6
184bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10457 O_BomoMSG19412_internal:A_BomoMSG_c26430_g1_i7
284bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
10458 O_BomoMSG19413_complete:A_BomoMSG_c26431_g1_i1
379bp
 phosphatidylserine_decarboxylase_proenzyme,_mitochondrial_[Bombyx_mori]
GO:0004609 F phosphatidylserine decarboxylase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
10459 O_BomoMSG19414_5prime_partial:A_BomoMSG_c26432_g1_i1
428bp
 zinc_finger_protein_672_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10460 O_BomoMSG19415_complete:A_BomoMSG_c26432_g1_i1
179bp
 zinc_finger_protein_672_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10461 O_BomoMSG19416_complete:A_BomoMSG_c26432_g1_i1
141bp
10462 O_BomoMSG19417_complete:A_BomoMSG_c26433_g1_i2
856bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741849_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0042803 F protein homodimerization activity
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:1990923 C PET complex
10463 O_BomoMSG19418_complete:A_BomoMSG_c26433_g1_i2
207bp
10464 O_BomoMSG19419_5prime_partial:A_BomoMSG_c26433_g1_i3
726bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741849_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0042803 F protein homodimerization activity
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:1990923 C PET complex
10465 O_BomoMSG1941_5prime_partial:A_BomoMSG_c9483_g1_i1
142bp
10466 O_BomoMSG19420_complete:A_BomoMSG_c26433_g1_i3
207bp
10467 O_BomoMSG19421_internal:A_BomoMSG_c26434_g1_i1
229bp
 axoneme-associated_protein_mst101(2)_isoform_X3_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10468 O_BomoMSG19422_3prime_partial:A_BomoMSG_c26434_g1_i1
144bp
10469 O_BomoMSG19423_internal:A_BomoMSG_c26434_g1_i2
502bp
 axoneme-associated_protein_mst101(2)_isoform_X3_[Bombyx_mori]
10470 O_BomoMSG19424_complete:A_BomoMSG_c26434_g1_i2
233bp
previous next from show/29137

- SilkBase 1999-2023 -