SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10321 O_BomoMSG19290_5prime_partial:A_BomoMSG_c26400_g1_i3
1379bp
 uncharacterized_protein_LOC105841250_isoform_X1_[Bombyx_mori]
10322 O_BomoMSG19291_complete:A_BomoMSG_c26400_g1_i3
129bp
10323 O_BomoMSG19292_complete:A_BomoMSG_c26400_g1_i3
108bp
10324 O_BomoMSG19293_3prime_partial:A_BomoMSG_c26401_g1_i1
894bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
10325 O_BomoMSG19294_5prime_partial:A_BomoMSG_c26401_g1_i1
131bp
 hypothetical_protein_T4A_9941,_partial_[Trichinella_pseudospiralis]
10326 O_BomoMSG19295_complete:A_BomoMSG_c26401_g1_i1
105bp
10327 O_BomoMSG19296_complete:A_BomoMSG_c26401_g1_i2
390bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
10328 O_BomoMSG19297_complete:A_BomoMSG_c26401_g1_i2
119bp
10329 O_BomoMSG19298_internal:A_BomoMSG_c26401_g1_i3
325bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
10330 O_BomoMSG19299_5prime_partial:A_BomoMSG_c26401_g1_i3
131bp
 hypothetical_protein_T4A_9941,_partial_[Trichinella_pseudospiralis]
10331 O_BomoMSG1929_5prime_partial:A_BomoMSG_c9430_g1_i1
114bp
10332 O_BomoMSG192_internal:A_BomoMSG_c846_g1_i1
104bp
 LOW_QUALITY_PROTEIN:_spectrin_beta_chain,_non-erythrocytic_2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005938 C cell cortex
GO:0046872 F metal ion binding
GO:0051693 P actin filament capping
10333 O_BomoMSG19300_complete:A_BomoMSG_c26401_g1_i3
105bp
10334 O_BomoMSG19301_5prime_partial:A_BomoMSG_c26402_g3_i1
127bp
10335 O_BomoMSG19302_5prime_partial:A_BomoMSG_c26403_g1_i1
145bp
 PREDICTED:_inactive_peptidyl-prolyl_cis-trans_isomerase_shutdown-like_[Plutella_xylostella]
10336 O_BomoMSG19303_5prime_partial:A_BomoMSG_c26403_g1_i2
171bp
 PREDICTED:_inactive_peptidyl-prolyl_cis-trans_isomerase_shutdown-like_[Plutella_xylostella]
10337 O_BomoMSG19304_5prime_partial:A_BomoMSG_c26403_g1_i3
274bp
 PREDICTED:_inactive_peptidyl-prolyl_cis-trans_isomerase_shutdown-like_[Papilio_machaon]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005528 F FK506 binding
GO:0005737 C cytoplasm
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043186 C P granule
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
GO:0061077 P chaperone-mediated protein folding
GO:0070725 C Yb body
10338 O_BomoMSG19305_complete:A_BomoMSG_c26403_g3_i1
290bp
 uncharacterized_protein_LOC101739460_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:1901998 P toxin transport
10339 O_BomoMSG19306_3prime_partial:A_BomoMSG_c26403_g4_i1
123bp
 PREDICTED:_inactive_peptidyl-prolyl_cis-trans_isomerase_shutdown-like_[Papilio_xuthus]
10340 O_BomoMSG19307_internal:A_BomoMSG_c26404_g1_i1
251bp
 E3_ubiquitin-protein_ligase_MYLIP_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006928 P movement of cell or subcellular component
GO:0007399 P nervous system development
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0010989 P negative regulation of low-density lipoprotein particle clearance
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019898 C extrinsic component of membrane
GO:0031648 P protein destabilization
GO:0032803 P regulation of low-density lipoprotein particle receptor catabolic process
GO:0042632 P cholesterol homeostasis
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
10341 O_BomoMSG19308_5prime_partial:A_BomoMSG_c26404_g1_i1
188bp
10342 O_BomoMSG19309_3prime_partial:A_BomoMSG_c26404_g1_i2
377bp
 E3_ubiquitin-protein_ligase_MYLIP_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0046872 F metal ion binding
10343 O_BomoMSG1930_internal:A_BomoMSG_c9431_g1_i1
326bp
 hypothetical_protein_RR46_00776_[Papilio_xuthus]
10344 O_BomoMSG19310_5prime_partial:A_BomoMSG_c26404_g1_i2
188bp
10345 O_BomoMSG19311_5prime_partial:A_BomoMSG_c26408_g1_i1
110bp
10346 O_BomoMSG19312_internal:A_BomoMSG_c26408_g3_i1
115bp
 uncharacterized_protein_LOC101741134_[Bombyx_mori]
10347 O_BomoMSG19313_5prime_partial:A_BomoMSG_c26408_g3_i2
113bp
10348 O_BomoMSG19314_complete:A_BomoMSG_c26409_g1_i1
458bp
 protein_Smaug_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0045202 C synapse
10349 O_BomoMSG19315_internal:A_BomoMSG_c26409_g1_i2
104bp
 protein_Smaug_[Bombyx_mori]
10350 O_BomoMSG19316_3prime_partial:A_BomoMSG_c26409_g1_i3
561bp
 protein_Smaug_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030371 F translation repressor activity
previous next from show/29137

- SilkBase 1999-2023 -