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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10351 O_BomoMSG19317_complete:A_BomoMSG_c26409_g1_i3
115bp
10352 O_BomoMSG19318_internal:A_BomoMSG_c26409_g1_i4
380bp
 protein_Smaug_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030371 F translation repressor activity
10353 O_BomoMSG19319_complete:A_BomoMSG_c26409_g1_i4
115bp
10354 O_BomoMSG1931_3prime_partial:A_BomoMSG_c9438_g1_i1
131bp
 DNA-directed_RNA_polymerase_II_subunit_RPB9_[Bombyx_mori]
GO:0001193 P maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005730 C nucleolus
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007067 P mitotic cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008270 F zinc ion binding
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
10355 O_BomoMSG19320_internal:A_BomoMSG_c26409_g1_i5
129bp
 protein_Smaug_[Bombyx_mori]
10356 O_BomoMSG19321_internal:A_BomoMSG_c26409_g1_i6
395bp
 protein_Smaug_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030371 F translation repressor activity
10357 O_BomoMSG19322_complete:A_BomoMSG_c26409_g1_i6
115bp
10358 O_BomoMSG19323_complete:A_BomoMSG_c26410_g1_i1
365bp
 glutathione_S-transferase_D7_isoform_X2_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0004602 F glutathione peroxidase activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0006749 P glutathione metabolic process
GO:0016740 F transferase activity
GO:0098869 P cellular oxidant detoxification
10359 O_BomoMSG19324_complete:A_BomoMSG_c26410_g1_i1
130bp
10360 O_BomoMSG19325_5prime_partial:A_BomoMSG_c26410_g1_i3
258bp
 glutathione_S-transferase_D7_isoform_X2_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0004602 F glutathione peroxidase activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0006749 P glutathione metabolic process
GO:0016740 F transferase activity
GO:0098869 P cellular oxidant detoxification
10361 O_BomoMSG19326_complete:A_BomoMSG_c26410_g1_i3
130bp
10362 O_BomoMSG19327_5prime_partial:A_BomoMSG_c26410_g1_i4
195bp
 glutathione_S-transferase_D7_isoform_X2_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
10363 O_BomoMSG19328_internal:A_BomoMSG_c26411_g1_i1
264bp
 uncharacterized_protein_LOC101742950_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030154 P cell differentiation
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0051038 P negative regulation of transcription involved in meiotic cell cycle
10364 O_BomoMSG19329_internal:A_BomoMSG_c26411_g2_i1
309bp
 uncharacterized_protein_LOC101742950_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030154 P cell differentiation
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0051038 P negative regulation of transcription involved in meiotic cell cycle
10365 O_BomoMSG1932_internal:A_BomoMSG_c9443_g1_i1
121bp
 probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002576 P platelet degranulation
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0015662 F P-type ion transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016887 F ATP hydrolysis activity
GO:0031088 C platelet dense granule membrane
GO:0032310 P prostaglandin secretion
GO:0034220 P ion transmembrane transport
GO:0042384 P cilium assembly
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0055114 P obsolete oxidation-reduction process
GO:0098656 P anion transmembrane transport
10366 O_BomoMSG19330_5prime_partial:A_BomoMSG_c26411_g2_i1
174bp
10367 O_BomoMSG19331_complete:A_BomoMSG_c26411_g2_i1
119bp
10368 O_BomoMSG19332_complete:A_BomoMSG_c26412_g1_i1
601bp
 mucolipin-3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007626 P locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042491 P inner ear auditory receptor cell differentiation
10369 O_BomoMSG19333_5prime_partial:A_BomoMSG_c26412_g1_i2
286bp
 mucolipin-3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007626 P locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042491 P inner ear auditory receptor cell differentiation
10370 O_BomoMSG19334_5prime_partial:A_BomoMSG_c26412_g1_i3
385bp
 mucolipin-3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007626 P locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042491 P inner ear auditory receptor cell differentiation
10371 O_BomoMSG19335_complete:A_BomoMSG_c26413_g1_i1
711bp
 mitogen-activated_protein_kinase_kinase_kinase_7_isoform_X1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0001525 P angiogenesis
GO:0001841 P neural tube formation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007252 P I-kappaB phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0046330 P positive regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0060546 P negative regulation of necroptotic process
GO:0097110 F scaffold protein binding
GO:0097481 C postsynaptic density
GO:1902443 P negative regulation of ripoptosome assembly involved in necroptotic process
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2000378 P negative regulation of reactive oxygen species metabolic process
GO:2001234 P negative regulation of apoptotic signaling pathway
10372 O_BomoMSG19336_complete:A_BomoMSG_c26413_g1_i1
111bp
10373 O_BomoMSG19337_5prime_partial:A_BomoMSG_c26413_g1_i2
606bp
 mitogen-activated_protein_kinase_kinase_kinase_7_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0002726 P positive regulation of T cell cytokine production
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0007252 P I-kappaB phosphorylation
GO:0007254 P JNK cascade
GO:0008385 C IkappaB kinase complex
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032743 P positive regulation of interleukin-2 production
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:0051403 P stress-activated MAPK cascade
GO:0097110 F scaffold protein binding
10374 O_BomoMSG19338_3prime_partial:A_BomoMSG_c26413_g1_i2
101bp
10375 O_BomoMSG19339_5prime_partial:A_BomoMSG_c26413_g1_i3
632bp
 mitogen-activated_protein_kinase_kinase_kinase_7_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0002726 P positive regulation of T cell cytokine production
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0007252 P I-kappaB phosphorylation
GO:0007254 P JNK cascade
GO:0008385 C IkappaB kinase complex
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032743 P positive regulation of interleukin-2 production
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:0051403 P stress-activated MAPK cascade
GO:0097110 F scaffold protein binding
10376 O_BomoMSG1933_internal:A_BomoMSG_c9446_g1_i1
104bp
 probable_chitinase_10_isoform_X1_[Bombyx_mori]
10377 O_BomoMSG19340_complete:A_BomoMSG_c26413_g1_i3
111bp
10378 O_BomoMSG19341_5prime_partial:A_BomoMSG_c26413_g1_i4
677bp
 mitogen-activated_protein_kinase_kinase_kinase_7_isoform_X1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0000187 P obsolete activation of MAPK activity
GO:0001525 P angiogenesis
GO:0001841 P neural tube formation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007252 P I-kappaB phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043507 P positive regulation of JUN kinase activity
GO:0046330 P positive regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0060546 P negative regulation of necroptotic process
GO:0097110 F scaffold protein binding
GO:0097481 C postsynaptic density
GO:1902443 P negative regulation of ripoptosome assembly involved in necroptotic process
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2000378 P negative regulation of reactive oxygen species metabolic process
GO:2001234 P negative regulation of apoptotic signaling pathway
10379 O_BomoMSG19342_complete:A_BomoMSG_c26413_g1_i4
111bp
10380 O_BomoMSG19343_5prime_partial:A_BomoMSG_c26414_g1_i1
374bp
 protein_unc-13_homolog_4B_isoform_X5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007186 P G protein-coupled receptor signaling pathway
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