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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10201 O_BomoMSG19182_complete:A_BomoMSG_c26373_g1_i1
151bp
 uncharacterized_protein_CG1161_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031902 C late endosome membrane
10202 O_BomoMSG19183_5prime_partial:A_BomoMSG_c26373_g1_i2
135bp
 uncharacterized_protein_CG1161_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031902 C late endosome membrane
10203 O_BomoMSG19184_5prime_partial:A_BomoMSG_c26373_g1_i3
131bp
 uncharacterized_protein_CG1161_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031902 C late endosome membrane
10204 O_BomoMSG19185_5prime_partial:A_BomoMSG_c26374_g2_i1
215bp
 histone_deacetylase_3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0070932 P histone H3 deacetylation
10205 O_BomoMSG19186_complete:A_BomoMSG_c26375_g1_i2
406bp
 coiled-coil_domain-containing_protein_85C-B_[Bombyx_mori]
GO:0007275 P multicellular organism development
10206 O_BomoMSG19187_complete:A_BomoMSG_c26376_g1_i3
183bp
 SAYSvFN_domain-containing_protein_1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
10207 O_BomoMSG19188_3prime_partial:A_BomoMSG_c26377_g1_i1
197bp
 lateral_signaling_target_protein_2_homolog_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0007175 P negative regulation of epidermal growth factor-activated receptor activity
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0046872 F metal ion binding
10208 O_BomoMSG19189_5prime_partial:A_BomoMSG_c26377_g2_i1
324bp
 lateral_signaling_target_protein_2_homolog_[Bombyx_mori]
GO:0046872 F metal ion binding
10209 O_BomoMSG1918_internal:A_BomoMSG_c9397_g1_i1
136bp
10210 O_BomoMSG19190_complete:A_BomoMSG_c26377_g2_i1
107bp
10211 O_BomoMSG19191_complete:A_BomoMSG_c26377_g2_i1
102bp
10212 O_BomoMSG19192_5prime_partial:A_BomoMSG_c26377_g2_i2
108bp
 lateral_signaling_target_protein_2_homolog_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0007175 P negative regulation of epidermal growth factor-activated receptor activity
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0046872 F metal ion binding
10213 O_BomoMSG19193_5prime_partial:A_BomoMSG_c26377_g2_i3
899bp
 lateral_signaling_target_protein_2_homolog_[Bombyx_mori]
GO:0046872 F metal ion binding
10214 O_BomoMSG19194_complete:A_BomoMSG_c26377_g2_i3
107bp
10215 O_BomoMSG19195_complete:A_BomoMSG_c26377_g2_i3
102bp
10216 O_BomoMSG19196_5prime_partial:A_BomoMSG_c26378_g1_i1
613bp
 ATP-binding_cassette_sub-family_B_member_8,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002481 P antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 P antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 P antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 P positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
10217 O_BomoMSG19197_complete:A_BomoMSG_c26379_g1_i1
425bp
 H/ACA_ribonucleoprotein_complex_non-core_subunit_NAF1_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0006364 P rRNA processing
GO:0022008 P neurogenesis
GO:0042254 P ribosome biogenesis
10218 O_BomoMSG19198_complete:A_BomoMSG_c26379_g1_i1
114bp
10219 O_BomoMSG19199_5prime_partial:A_BomoMSG_c26379_g1_i2
360bp
 H/ACA_ribonucleoprotein_complex_non-core_subunit_NAF1_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0006364 P rRNA processing
GO:0022008 P neurogenesis
GO:0042254 P ribosome biogenesis
10220 O_BomoMSG1919_internal:A_BomoMSG_c9397_g1_i1
135bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841417,_partial_[Bombyx_mori]
10221 O_BomoMSG191_internal:A_BomoMSG_c827_g1_i1
104bp
10222 O_BomoMSG19200_3prime_partial:A_BomoMSG_c26379_g1_i2
108bp
10223 O_BomoMSG19201_complete:A_BomoMSG_c26380_g1_i1
266bp
 uncharacterized_protein_LOC101744553_isoform_X1_[Bombyx_mori]
10224 O_BomoMSG19202_complete:A_BomoMSG_c26380_g1_i1
184bp
10225 O_BomoMSG19203_complete:A_BomoMSG_c26380_g1_i2
396bp
 uncharacterized_protein_LOC101744553_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0046872 F metal ion binding
10226 O_BomoMSG19204_complete:A_BomoMSG_c26380_g1_i2
184bp
10227 O_BomoMSG19205_complete:A_BomoMSG_c26380_g1_i3
415bp
 uncharacterized_protein_LOC101744553_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0046872 F metal ion binding
10228 O_BomoMSG19206_complete:A_BomoMSG_c26380_g1_i3
184bp
10229 O_BomoMSG19207_complete:A_BomoMSG_c26381_g1_i1
722bp
 glycerol-3-phosphate_dehydrogenase_isoform_2_[Bombyx_mori]
GO:0004368 F glycerol-3-phosphate dehydrogenase (quinone) activity
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006072 P glycerol-3-phosphate metabolic process
GO:0006094 P gluconeogenesis
GO:0009331 C glycerol-3-phosphate dehydrogenase complex
GO:0016491 F oxidoreductase activity
GO:0019563 P glycerol catabolic process
GO:0035264 P multicellular organism growth
GO:0043010 P camera-type eye development
GO:0044255 P cellular lipid metabolic process
GO:0046872 F metal ion binding
GO:0052590 F sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity
GO:0052591 F sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
10230 O_BomoMSG19208_complete:A_BomoMSG_c26381_g1_i1
136bp
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