SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9241 O_BomoASG18318_5prime_partial:A_BomoASG_c30182_g1_i1
164bp
 cuticular_protein_RR-2_motif_140_isoform_X3_[Bombyx_mori]
9242 O_BomoASG18319_complete:A_BomoASG_c30182_g1_i1
154bp
9243 O_BomoASG1831_complete:A_BomoASG_c11854_g1_i1
178bp
9244 O_BomoASG18320_5prime_partial:A_BomoASG_c30182_g1_i2
510bp
 cuticular_protein_RR-2_motif_140_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008010 F structural constituent of chitin-based larval cuticle
GO:0008061 F chitin binding
GO:0008150 P biological_process
GO:0030023 F extracellular matrix constituent conferring elasticity
GO:0031012 C extracellular matrix
GO:0032992 C protein-carbohydrate complex
GO:0040003 P chitin-based cuticle development
GO:0042302 F structural constituent of cuticle
9245 O_BomoASG18321_complete:A_BomoASG_c30182_g1_i2
154bp
9246 O_BomoASG18322_5prime_partial:A_BomoASG_c30182_g1_i3
463bp
 cuticular_protein_RR-2_motif_140_isoform_X3_[Bombyx_mori]
9247 O_BomoASG18323_complete:A_BomoASG_c30182_g1_i3
154bp
9248 O_BomoASG18324_complete:A_BomoASG_c30183_g1_i1
652bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
9249 O_BomoASG18325_complete:A_BomoASG_c30183_g1_i1
109bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000963 P mitochondrial RNA processing
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006119 P oxidative phosphorylation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0022904 P respiratory electron transport chain
GO:0032508 P DNA duplex unwinding
GO:0044528 P regulation of mitochondrial mRNA stability
GO:0070131 P positive regulation of mitochondrial translation
GO:0090646 P mitochondrial tRNA processing
GO:0097222 P mitochondrial mRNA polyadenylation
9250 O_BomoASG18326_complete:A_BomoASG_c30183_g1_i2
652bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
9251 O_BomoASG18327_complete:A_BomoASG_c30183_g1_i2
103bp
 ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000963 P mitochondrial RNA processing
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006119 P oxidative phosphorylation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0022904 P respiratory electron transport chain
GO:0032508 P DNA duplex unwinding
GO:0044528 P regulation of mitochondrial mRNA stability
GO:0070131 P positive regulation of mitochondrial translation
GO:0090646 P mitochondrial tRNA processing
GO:0097222 P mitochondrial mRNA polyadenylation
9252 O_BomoASG18328_complete:A_BomoASG_c30184_g1_i1
1495bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
9253 O_BomoASG18329_5prime_partial:A_BomoASG_c30184_g1_i2
864bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
9254 O_BomoASG1832_complete:A_BomoASG_c11854_g1_i1
123bp
9255 O_BomoASG18330_internal:A_BomoASG_c30185_g1_i1
649bp
 focal_adhesion_kinase_1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0001525 P angiogenesis
GO:0001568 P blood vessel development
GO:0001570 P vasculogenesis
GO:0001725 C stress fiber
GO:0001764 P neuron migration
GO:0001890 P placenta development
GO:0001932 P regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0003007 P heart morphogenesis
GO:0003779 F actin binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0004871 F obsolete signal transducer activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0007172 P signal complex assembly
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007229 P integrin-mediated signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0008284 P positive regulation of cell population proliferation
GO:0008360 P regulation of cell shape
GO:0008432 F JUN kinase binding
GO:0009790 P embryo development
GO:0010594 P regulation of endothelial cell migration
GO:0010632 P regulation of epithelial cell migration
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019901 F protein kinase binding
GO:0021955 P central nervous system neuron axonogenesis
GO:0022408 P negative regulation of cell-cell adhesion
GO:0030010 P establishment of cell polarity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030198 P extracellular matrix organization
GO:0030335 P positive regulation of cell migration
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0033628 P regulation of cell adhesion mediated by integrin
GO:0038007 P netrin-activated signaling pathway
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0040023 P nuclear migration
GO:0042127 P regulation of cell population proliferation
GO:0042169 F SH2 domain binding
GO:0043066 P negative regulation of apoptotic process
GO:0043087 P regulation of GTPase activity
GO:0043542 P endothelial cell migration
GO:0043547 P positive regulation of GTPase activity
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045087 P innate immune response
GO:0045667 P regulation of osteoblast differentiation
GO:0045860 P positive regulation of protein kinase activity
GO:0046621 P negative regulation of organ growth
GO:0046777 P protein autophosphorylation
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048013 P ephrin receptor signaling pathway
GO:0048870 P cell motility
GO:0050771 P negative regulation of axonogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051893 P regulation of focal adhesion assembly
GO:0051897 P positive regulation of protein kinase B signaling
GO:0051964 P negative regulation of synapse assembly
GO:0060396 P growth hormone receptor signaling pathway
GO:0071560 P cellular response to transforming growth factor beta stimulus
GO:1900024 P regulation of substrate adhesion-dependent cell spreading
GO:2000060 P positive regulation of ubiquitin-dependent protein catabolic process
GO:2000811 P negative regulation of anoikis
9256 O_BomoASG18331_complete:A_BomoASG_c30185_g1_i1
106bp
9257 O_BomoASG18332_complete:A_BomoASG_c30185_g1_i1
101bp
9258 O_BomoASG18333_internal:A_BomoASG_c30185_g1_i2
100bp
 focal_adhesion_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0004871 F obsolete signal transducer activity
GO:0005524 F ATP binding
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007172 P signal complex assembly
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030054 C cell junction
9259 O_BomoASG18334_complete:A_BomoASG_c30186_g1_i1
407bp
 lanC-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0043295 F glutathione binding
GO:0046872 F metal ion binding
GO:0050750 F low-density lipoprotein particle receptor binding
GO:0070062 C extracellular exosome
9260 O_BomoASG18335_complete:A_BomoASG_c30186_g1_i2
264bp
 lanC-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0009789 P positive regulation of abscisic acid-activated signaling pathway
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0030864 C cortical actin cytoskeleton
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070273 F phosphatidylinositol-4-phosphate binding
9261 O_BomoASG18336_complete:A_BomoASG_c30186_g1_i2
101bp
 lanC-like_protein_1_isoform_X1_[Bombyx_mori]
9262 O_BomoASG18337_internal:A_BomoASG_c30188_g1_i1
117bp
 myelin_regulatory_factor_isoform_X2_[Bombyx_mori]
9263 O_BomoASG18338_internal:A_BomoASG_c30188_g1_i1
117bp
9264 O_BomoASG18339_internal:A_BomoASG_c30188_g1_i2
864bp
 myelin_regulatory_factor_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0014003 P oligodendrocyte development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0022010 P central nervous system myelination
GO:0030154 P cell differentiation
GO:0031643 P positive regulation of myelination
GO:0032286 P central nervous system myelin maintenance
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048709 P oligodendrocyte differentiation
9265 O_BomoASG1833_internal:A_BomoASG_c11863_g1_i1
111bp
 uncharacterized_protein_LOC101736700_[Bombyx_mori]
9266 O_BomoASG18340_5prime_partial:A_BomoASG_c30188_g1_i2
248bp
9267 O_BomoASG18341_complete:A_BomoASG_c30188_g1_i2
163bp
9268 O_BomoASG18342_complete:A_BomoASG_c30188_g1_i2
100bp
 Diacylglycerol_kinase,_partial_[Operophtera_brumata]
9269 O_BomoASG18343_internal:A_BomoASG_c30188_g1_i3
99bp
 myelin_regulatory_factor_isoform_X3_[Bombyx_mori]
9270 O_BomoASG18344_internal:A_BomoASG_c30188_g1_i3
99bp
previous next from show/32479

- SilkBase 1999-2023 -