SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9271 O_BomoASG18345_complete:A_BomoASG_c30189_g1_i1
347bp
 cyclin_A_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010389 P regulation of G2/M transition of mitotic cell cycle
GO:0019901 F protein kinase binding
GO:0051301 P cell division
9272 O_BomoASG18346_complete:A_BomoASG_c30189_g1_i2
512bp
 cyclin_A_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010389 P regulation of G2/M transition of mitotic cell cycle
GO:0019901 F protein kinase binding
GO:0051301 P cell division
9273 O_BomoASG18347_5prime_partial:A_BomoASG_c30189_g1_i3
396bp
 cyclin_A_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010389 P regulation of G2/M transition of mitotic cell cycle
GO:0019901 F protein kinase binding
GO:0051301 P cell division
9274 O_BomoASG18348_5prime_partial:A_BomoASG_c30189_g1_i4
499bp
 cyclin_A_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010389 P regulation of G2/M transition of mitotic cell cycle
GO:0019901 F protein kinase binding
GO:0051301 P cell division
9275 O_BomoASG18349_3prime_partial:A_BomoASG_c30191_g1_i2
372bp
 paramyosin_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0001520 C outer dense fiber
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0017137 F small GTPase binding
GO:0030154 P cell differentiation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0072372 C cilium
GO:0097539 C ciliary transition fiber
GO:1902017 P regulation of cilium assembly
9276 O_BomoASG1834_internal:A_BomoASG_c11865_g1_i1
143bp
 uncharacterized_protein_LOC101738384_isoform_X1_[Bombyx_mori]
9277 O_BomoASG18350_5prime_partial:A_BomoASG_c30191_g1_i2
132bp
9278 O_BomoASG18351_3prime_partial:A_BomoASG_c30191_g1_i3
372bp
 paramyosin_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0001520 C outer dense fiber
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0017137 F small GTPase binding
GO:0030154 P cell differentiation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0072372 C cilium
GO:0097539 C ciliary transition fiber
GO:1902017 P regulation of cilium assembly
9279 O_BomoASG18352_5prime_partial:A_BomoASG_c30191_g1_i3
132bp
9280 O_BomoASG18353_3prime_partial:A_BomoASG_c30191_g1_i4
454bp
 paramyosin_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0001520 C outer dense fiber
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0017137 F small GTPase binding
GO:0030154 P cell differentiation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0072372 C cilium
GO:0097539 C ciliary transition fiber
GO:1902017 P regulation of cilium assembly
9281 O_BomoASG18354_5prime_partial:A_BomoASG_c30191_g1_i4
132bp
9282 O_BomoASG18355_complete:A_BomoASG_c30191_g1_i5
222bp
 paramyosin_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0042995 C cell projection
9283 O_BomoASG18356_3prime_partial:A_BomoASG_c30191_g1_i5
168bp
 paramyosin_[Bombyx_mori]
9284 O_BomoASG18357_5prime_partial:A_BomoASG_c30191_g1_i5
132bp
9285 O_BomoASG18358_3prime_partial:A_BomoASG_c30191_g1_i6
454bp
 paramyosin_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0001520 C outer dense fiber
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0017137 F small GTPase binding
GO:0030154 P cell differentiation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0072372 C cilium
GO:0097539 C ciliary transition fiber
GO:1902017 P regulation of cilium assembly
9286 O_BomoASG18359_5prime_partial:A_BomoASG_c30191_g1_i6
132bp
9287 O_BomoASG1835_internal:A_BomoASG_c11877_g1_i1
146bp
 PREDICTED:_suppressor_of_hairless_protein,_partial_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000982 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001709 P cell fate determination
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007219 P Notch signaling pathway
GO:0007252 P I-kappaB phosphorylation
GO:0007275 P multicellular organism development
GO:0007451 P dorsal/ventral lineage restriction, imaginal disc
GO:0007616 P long-term memory
GO:0008356 P asymmetric cell division
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016360 P sensory organ precursor cell fate determination
GO:0017053 C transcription repressor complex
GO:0030097 P hemopoiesis
GO:0042683 P negative regulation of compound eye cone cell fate specification
GO:0042688 P crystal cell differentiation
GO:0043234 C protein-containing complex
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046331 P lateral inhibition
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
9288 O_BomoASG18360_3prime_partial:A_BomoASG_c30191_g1_i8
535bp
 paramyosin_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0001520 C outer dense fiber
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0017137 F small GTPase binding
GO:0030154 P cell differentiation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0072372 C cilium
GO:0097539 C ciliary transition fiber
GO:1902017 P regulation of cilium assembly
9289 O_BomoASG18361_5prime_partial:A_BomoASG_c30191_g1_i8
132bp
9290 O_BomoASG18362_5prime_partial:A_BomoASG_c30192_g1_i1
169bp
 LOW_QUALITY_PROTEIN:_protein_SMG9_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
9291 O_BomoASG18363_complete:A_BomoASG_c30192_g1_i2
482bp
 LOW_QUALITY_PROTEIN:_protein_SMG9_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
9292 O_BomoASG18364_internal:A_BomoASG_c30194_g1_i1
507bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
9293 O_BomoASG18365_3prime_partial:A_BomoASG_c30194_g1_i2
470bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
9294 O_BomoASG18366_internal:A_BomoASG_c30194_g1_i3
1023bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
9295 O_BomoASG18367_complete:A_BomoASG_c30194_g1_i3
203bp
9296 O_BomoASG18368_internal:A_BomoASG_c30194_g1_i4
362bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
9297 O_BomoASG18369_complete:A_BomoASG_c30195_g1_i1
160bp
 uncharacterized_protein_C15orf41_homolog_isoform_X1_[Bombyx_mori]
9298 O_BomoASG1836_3prime_partial:A_BomoASG_c11887_g1_i1
115bp
 carbohydrate_sulfotransferase_11_isoform_X1_[Bombyx_mori]
9299 O_BomoASG18370_complete:A_BomoASG_c30195_g1_i2
288bp
 uncharacterized_protein_C15orf41_homolog_isoform_X1_[Bombyx_mori]
9300 O_BomoASG18371_5prime_partial:A_BomoASG_c30197_g1_i1
843bp
 chromatin-remodeling_complex_ATPase_chain_Iswi_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0006333 P chromatin assembly or disassembly
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007517 P muscle organ development
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008134 F transcription factor binding
GO:0008623 C CHRAC
GO:0016568 P chromatin organization
GO:0016584 P nucleosome positioning
GO:0016589 C NURF complex
GO:0016590 C ACF complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0019233 P sensory perception of pain
GO:0031010 C ISWI-type complex
GO:0031213 C RSF complex
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035060 C brahma complex
GO:0035063 P nuclear speck organization
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042752 P regulation of circadian rhythm
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0070615 F ATP-dependent chromatin remodeler activity
previous next from show/32479

- SilkBase 1999-2023 -