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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6211 O_BomoASG15591_complete:A_BomoASG_c29149_g3_i5
167bp
 uncharacterized_protein_LOC101735549_isoform_X2_[Bombyx_mori]
6212 O_BomoASG15592_complete:A_BomoASG_c29149_g3_i6
161bp
 uncharacterized_protein_LOC101735549_isoform_X3_[Bombyx_mori]
6213 O_BomoASG15593_complete:A_BomoASG_c29149_g3_i7
167bp
 uncharacterized_protein_LOC101735549_isoform_X2_[Bombyx_mori]
6214 O_BomoASG15594_complete:A_BomoASG_c29149_g3_i8
167bp
 uncharacterized_protein_LOC101735549_isoform_X2_[Bombyx_mori]
6215 O_BomoASG15595_complete:A_BomoASG_c29150_g1_i2
499bp
 uncharacterized_protein_LOC101742841_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
6216 O_BomoASG15596_complete:A_BomoASG_c29150_g1_i2
159bp
6217 O_BomoASG15597_3prime_partial:A_BomoASG_c29151_g1_i1
417bp
 general_transcription_factor_IIE_subunit_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
6218 O_BomoASG15598_complete:A_BomoASG_c29151_g1_i1
222bp
6219 O_BomoASG15599_3prime_partial:A_BomoASG_c29151_g1_i2
271bp
 general_transcription_factor_IIE_subunit_1_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
6220 O_BomoASG1559_5prime_partial:A_BomoASG_c9607_g1_i1
101bp
 uncharacterized_protein_LOC101740329_[Bombyx_mori]
6221 O_BomoASG155_internal:A_BomoASG_c1167_g1_i1
116bp
 PREDICTED:_heat_shock_70_kDa_protein_cognate_4-like,_partial_[Rhinopithecus_roxellana]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
6222 O_BomoASG15600_complete:A_BomoASG_c29151_g1_i2
222bp
6223 O_BomoASG15601_5prime_partial:A_BomoASG_c29152_g1_i1
1007bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
6224 O_BomoASG15602_complete:A_BomoASG_c29152_g1_i1
176bp
6225 O_BomoASG15603_5prime_partial:A_BomoASG_c29152_g1_i1
155bp
6226 O_BomoASG15604_complete:A_BomoASG_c29152_g1_i1
125bp
6227 O_BomoASG15605_complete:A_BomoASG_c29152_g1_i1
125bp
6228 O_BomoASG15606_3prime_partial:A_BomoASG_c29152_g1_i1
120bp
6229 O_BomoASG15607_complete:A_BomoASG_c29152_g1_i2
678bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
6230 O_BomoASG15608_complete:A_BomoASG_c29152_g1_i2
125bp
6231 O_BomoASG15609_complete:A_BomoASG_c29152_g1_i2
103bp
6232 O_BomoASG1560_internal:A_BomoASG_c9619_g1_i1
106bp
 serine_protease_snake_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007311 P maternal specification of dorsal/ventral axis, oocyte, germ-line encoded
GO:0008063 P Toll signaling pathway
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0009950 P dorsal/ventral axis specification
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
6233 O_BomoASG15610_3prime_partial:A_BomoASG_c29153_g1_i1
499bp
 guanine_nucleotide_exchange_factor_subunit_Rich_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007411 P axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032483 P regulation of Rab protein signal transduction
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0035418 P protein localization to synapse
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0045467 P R7 cell development
GO:0050808 P synapse organization
GO:0060078 P regulation of postsynaptic membrane potential
GO:1903363 P negative regulation of cellular protein catabolic process
6234 O_BomoASG15611_complete:A_BomoASG_c29153_g1_i1
177bp
6235 O_BomoASG15612_complete:A_BomoASG_c29153_g1_i1
125bp
6236 O_BomoASG15613_5prime_partial:A_BomoASG_c29153_g1_i1
107bp
6237 O_BomoASG15614_3prime_partial:A_BomoASG_c29154_g1_i1
263bp
 RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
6238 O_BomoASG15615_complete:A_BomoASG_c29154_g1_i2
332bp
 RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
6239 O_BomoASG15616_complete:A_BomoASG_c29154_g1_i2
121bp
6240 O_BomoASG15617_3prime_partial:A_BomoASG_c29154_g1_i3
258bp
 RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
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