SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5911 O_BomoASG15320_complete:A_BomoASG_c29023_g1_i3
116bp
5912 O_BomoASG15321_complete:A_BomoASG_c29025_g1_i1
397bp
 uncharacterized_protein_LOC101741494_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0046598 P positive regulation of viral entry into host cell
GO:0070062 C extracellular exosome
5913 O_BomoASG15322_complete:A_BomoASG_c29026_g1_i1
319bp
 uncharacterized_protein_LOC101738833_[Bombyx_mori]
5914 O_BomoASG15323_5prime_partial:A_BomoASG_c29026_g1_i3
226bp
 uncharacterized_protein_LOC101738833_[Bombyx_mori]
5915 O_BomoASG15324_3prime_partial:A_BomoASG_c29027_g1_i1
112bp
 uncharacterized_protein_LOC101740229_isoform_X2_[Bombyx_mori]
5916 O_BomoASG15325_3prime_partial:A_BomoASG_c29027_g1_i2
218bp
 uncharacterized_protein_LOC101740229_isoform_X2_[Bombyx_mori]
5917 O_BomoASG15326_complete:A_BomoASG_c29027_g1_i2
105bp
5918 O_BomoASG15327_internal:A_BomoASG_c29027_g1_i3
152bp
 uncharacterized_protein_LOC101740229_isoform_X2_[Bombyx_mori]
5919 O_BomoASG15328_3prime_partial:A_BomoASG_c29027_g1_i4
267bp
 uncharacterized_protein_LOC101740229_isoform_X1_[Bombyx_mori]
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006695 P cholesterol biosynthetic process
GO:0008206 P bile acid metabolic process
GO:0015248 F sterol transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016125 P sterol metabolic process
GO:0030301 P cholesterol transport
GO:0032366 P intracellular sterol transport
GO:0032541 C cortical endoplasmic reticulum
GO:0090181 P regulation of cholesterol metabolic process
GO:0097036 P regulation of plasma membrane sterol distribution
5920 O_BomoASG15329_complete:A_BomoASG_c29027_g1_i4
110bp
5921 O_BomoASG1532_internal:A_BomoASG_c9495_g1_i1
116bp
 ribosomal_protein_L26_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
5922 O_BomoASG15330_complete:A_BomoASG_c29028_g1_i1
272bp
 uncharacterized_protein_LOC101741832_[Bombyx_mori]
5923 O_BomoASG15331_complete:A_BomoASG_c29028_g1_i2
272bp
 uncharacterized_protein_LOC101741832_[Bombyx_mori]
5924 O_BomoASG15332_complete:A_BomoASG_c29028_g1_i3
547bp
 uncharacterized_protein_LOC101741832_[Bombyx_mori]
5925 O_BomoASG15333_complete:A_BomoASG_c29028_g1_i3
119bp
5926 O_BomoASG15334_complete:A_BomoASG_c29030_g1_i1
352bp
 nitrogen_permease_regulator_2-like_protein_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0007293 P germarium-derived egg chamber formation
GO:0032007 P negative regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0035859 C Seh1-associated complex
GO:0038202 P TORC1 signaling
GO:0044754 C autolysosome
GO:0045792 P negative regulation of cell size
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
5927 O_BomoASG15335_5prime_partial:A_BomoASG_c29031_g1_i1
1859bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
5928 O_BomoASG15336_complete:A_BomoASG_c29031_g1_i1
168bp
5929 O_BomoASG15337_complete:A_BomoASG_c29031_g1_i1
122bp
5930 O_BomoASG15338_complete:A_BomoASG_c29031_g1_i2
2211bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
5931 O_BomoASG15339_complete:A_BomoASG_c29031_g1_i2
163bp
5932 O_BomoASG1533_complete:A_BomoASG_c9503_g1_i1
368bp
 pyruvate_dehydrogenase_E1_component_beta_subunit_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004738 F pyruvate dehydrogenase activity
GO:0004739 F pyruvate dehydrogenase (acetyl-transferring) activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0006086 P acetyl-CoA biosynthetic process from pyruvate
GO:0006099 P tricarboxylic acid cycle
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0034604 F pyruvate dehydrogenase (NAD+) activity
GO:0045254 C pyruvate dehydrogenase complex
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
5933 O_BomoASG15340_complete:A_BomoASG_c29031_g1_i2
122bp
5934 O_BomoASG15341_complete:A_BomoASG_c29031_g1_i3
2216bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
5935 O_BomoASG15342_complete:A_BomoASG_c29031_g1_i3
168bp
5936 O_BomoASG15343_complete:A_BomoASG_c29031_g1_i3
122bp
5937 O_BomoASG15344_5prime_partial:A_BomoASG_c29033_g1_i1
143bp
 LOW_QUALITY_PROTEIN:_protein_Wnt-5b_[Bombyx_mori]
GO:0005102 F signaling receptor binding
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007435 P salivary gland morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0016204 P determination of muscle attachment site
GO:0030425 C dendrite
GO:0045165 P cell fate commitment
GO:0045773 P positive regulation of axon extension
GO:0048675 P axon extension
GO:0050919 P negative chemotaxis
GO:0061643 P chemorepulsion of axon
GO:0070983 P dendrite guidance
GO:1902669 P positive regulation of axon guidance
5938 O_BomoASG15345_5prime_partial:A_BomoASG_c29033_g1_i2
100bp
5939 O_BomoASG15346_internal:A_BomoASG_c29037_g1_i1
302bp
 survivin-1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001890 P placenta development
GO:0004842 F ubiquitin-protein transferase activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0009966 P regulation of signal transduction
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030414 F peptidase inhibitor activity
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0042127 P regulation of cell population proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0051301 P cell division
GO:0060711 P labyrinthine layer development
GO:0060712 P spongiotrophoblast layer development
GO:0061631 F ubiquitin conjugating enzyme activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
5940 O_BomoASG15347_complete:A_BomoASG_c29037_g1_i1
101bp
previous next from show/32479

- SilkBase 1999-2023 -