SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5881 O_BomoASG15294_3prime_partial:A_BomoASG_c29010_g1_i2
489bp
 DNA_polymerase_iota_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
5882 O_BomoASG15295_3prime_partial:A_BomoASG_c29010_g1_i3
484bp
 DNA_polymerase_iota_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
5883 O_BomoASG15296_3prime_partial:A_BomoASG_c29011_g1_i1
151bp
 uncharacterized_protein_LOC101743204_[Bombyx_mori]
5884 O_BomoASG15297_5prime_partial:A_BomoASG_c29011_g1_i1
116bp
5885 O_BomoASG15298_complete:A_BomoASG_c29012_g1_i1
324bp
 autophagy_related_protein_Atg3-like_protein_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000153 C cytoplasmic ubiquitin ligase complex
GO:0000422 P autophagy of mitochondrion
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016874 F ligase activity
GO:0019776 F Atg8 ligase activity
GO:0019777 F Atg12 transferase activity
GO:0043653 P mitochondrial fragmentation involved in apoptotic process
GO:0044804 P autophagy of nucleus
5886 O_BomoASG15299_complete:A_BomoASG_c29012_g1_i1
123bp
5887 O_BomoASG1529_internal:A_BomoASG_c9489_g2_i1
108bp
 fibrohexamerin-like_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005576 C extracellular region
5888 O_BomoASG152_internal:A_BomoASG_c1155_g1_i1
115bp
 protein_5NUC_isoform_X4_[Bombyx_mori]
5889 O_BomoASG15300_internal:A_BomoASG_c29013_g1_i1
104bp
 LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
5890 O_BomoASG15301_internal:A_BomoASG_c29013_g1_i2
156bp
 LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
5891 O_BomoASG15302_5prime_partial:A_BomoASG_c29015_g1_i1
155bp
 uncharacterized_protein_LOC101739296_[Bombyx_mori]
5892 O_BomoASG15303_complete:A_BomoASG_c29015_g1_i2
263bp
 uncharacterized_protein_LOC101739296_[Bombyx_mori]
5893 O_BomoASG15304_5prime_partial:A_BomoASG_c29016_g1_i1
171bp
 4-hydroxyphenylpyruvate_dioxygenase_[Bombyx_mori]
GO:0003868 F 4-hydroxyphenylpyruvate dioxygenase activity
GO:0004462 F lactoylglutathione lyase activity
GO:0005575 C cellular_component
GO:0006559 P L-phenylalanine catabolic process
GO:0006572 P tyrosine catabolic process
GO:0009072 P aromatic amino acid family metabolic process
GO:0016491 F oxidoreductase activity
GO:0016701 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
5894 O_BomoASG15305_internal:A_BomoASG_c29018_g1_i1
782bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101738815_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0061458 P reproductive system development
GO:0070273 F phosphatidylinositol-4-phosphate binding
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
5895 O_BomoASG15306_complete:A_BomoASG_c29018_g1_i1
113bp
5896 O_BomoASG15307_internal:A_BomoASG_c29018_g1_i2
766bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101738815_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0061458 P reproductive system development
GO:0070273 F phosphatidylinositol-4-phosphate binding
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
5897 O_BomoASG15308_complete:A_BomoASG_c29018_g1_i2
116bp
5898 O_BomoASG15309_5prime_partial:A_BomoASG_c29019_g1_i1
364bp
 lon_protease_homolog,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0007568 P aging
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0009725 P response to hormone
GO:0010044 P response to aluminum ion
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030163 P protein catabolic process
GO:0034599 P cellular response to oxidative stress
GO:0042645 C mitochondrial nucleoid
GO:0043531 F ADP binding
GO:0043565 F sequence-specific DNA binding
GO:0043623 P protein-containing complex assembly
GO:0051131 P chaperone-mediated protein complex assembly
GO:0051260 P protein homooligomerization
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0051880 F G-quadruplex DNA binding
GO:0070182 F DNA polymerase binding
GO:0070361 F mitochondrial promoter sequence-specific DNA binding
GO:0070362 F mitochondrial promoter sequence-specific DNA binding
GO:0070407 P oxidation-dependent protein catabolic process
5899 O_BomoASG1530_internal:A_BomoASG_c9492_g1_i1
111bp
 protein_CREG1_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0040008 P regulation of growth
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:1903507 P negative regulation of nucleic acid-templated transcription
5900 O_BomoASG15310_5prime_partial:A_BomoASG_c29019_g1_i2
533bp
 lon_protease_homolog,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030163 P protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051131 P chaperone-mediated protein complex assembly
GO:0070361 F mitochondrial promoter sequence-specific DNA binding
5901 O_BomoASG15311_5prime_partial:A_BomoASG_c29019_g1_i3
522bp
 lon_protease_homolog,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030163 P protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051131 P chaperone-mediated protein complex assembly
GO:0070361 F mitochondrial promoter sequence-specific DNA binding
5902 O_BomoASG15312_complete:A_BomoASG_c29022_g3_i1
254bp
 uncharacterized_protein_LOC110381649_[Helicoverpa_armigera]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007350 P blastoderm segmentation
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008340 P determination of adult lifespan
GO:0008359 P regulation of bicoid mRNA localization
GO:0042070 P maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis specification
GO:0043565 F sequence-specific DNA binding
GO:0045450 P bicoid mRNA localization
GO:0045451 P pole plasm oskar mRNA localization
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0060322 P head development
GO:0060465 P pharynx development
5903 O_BomoASG15313_internal:A_BomoASG_c29023_g1_i1
540bp
 uncharacterized_protein_LOC101738384_isoform_X3_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0001756 P somitogenesis
GO:0005112 F Notch binding
GO:0005509 F calcium ion binding
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007386 P compartment pattern specification
GO:0009888 P tissue development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0048339 P paraxial mesoderm development
GO:0050768 P negative regulation of neurogenesis
5904 O_BomoASG15314_complete:A_BomoASG_c29023_g1_i1
116bp
5905 O_BomoASG15315_5prime_partial:A_BomoASG_c29023_g1_i1
110bp
5906 O_BomoASG15316_3prime_partial:A_BomoASG_c29023_g1_i2
394bp
 uncharacterized_protein_LOC101738384_isoform_X3_[Bombyx_mori]
5907 O_BomoASG15317_complete:A_BomoASG_c29023_g1_i2
116bp
5908 O_BomoASG15318_internal:A_BomoASG_c29023_g1_i3
586bp
 uncharacterized_protein_LOC101738384_isoform_X2_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0001756 P somitogenesis
GO:0005112 F Notch binding
GO:0005509 F calcium ion binding
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007386 P compartment pattern specification
GO:0009888 P tissue development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0048339 P paraxial mesoderm development
GO:0050768 P negative regulation of neurogenesis
5909 O_BomoASG15319_5prime_partial:A_BomoASG_c29023_g1_i3
139bp
5910 O_BomoASG1531_internal:A_BomoASG_c9493_g1_i1
206bp
 otoferlin-like_isoform_X4_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0010996 P response to auditory stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016323 C basolateral plasma membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0050885 P neuromuscular process controlling balance
previous next from show/32479

- SilkBase 1999-2023 -