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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5941 O_BomoASG15348_5prime_partial:A_BomoASG_c29041_g1_i1
165bp
 THAP_domain-containing_protein_1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5942 O_BomoASG15349_5prime_partial:A_BomoASG_c29041_g1_i4
140bp
 THAP_domain-containing_protein_1-like_[Bombyx_mori]
5943 O_BomoASG1534_complete:A_BomoASG_c9503_g1_i1
107bp
5944 O_BomoASG15350_complete:A_BomoASG_c29041_g1_i6
177bp
 THAP_domain-containing_protein_1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0046872 F metal ion binding
5945 O_BomoASG15351_complete:A_BomoASG_c29042_g1_i1
426bp
 uncharacterized_protein_LOC101736479_isoform_X2_[Bombyx_mori]
5946 O_BomoASG15352_complete:A_BomoASG_c29042_g1_i1
130bp
5947 O_BomoASG15353_5prime_partial:A_BomoASG_c29043_g1_i1
238bp
 solute_carrier_family_12_member_9_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
5948 O_BomoASG15354_3prime_partial:A_BomoASG_c29043_g1_i1
145bp
5949 O_BomoASG15355_5prime_partial:A_BomoASG_c29043_g1_i1
104bp
5950 O_BomoASG15356_3prime_partial:A_BomoASG_c29045_g1_i1
376bp
 FAST_kinase_domain-containing_protein_5,_mitochondrial_[Bombyx_mori]
GO:0000963 P mitochondrial RNA processing
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0005739 C mitochondrion
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0019843 F rRNA binding
GO:0035770 C ribonucleoprotein granule
GO:0042645 C mitochondrial nucleoid
GO:0045333 P cellular respiration
5951 O_BomoASG15357_3prime_partial:A_BomoASG_c29045_g1_i2
376bp
 FAST_kinase_domain-containing_protein_5,_mitochondrial_[Bombyx_mori]
GO:0000963 P mitochondrial RNA processing
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0005739 C mitochondrion
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0019843 F rRNA binding
GO:0035770 C ribonucleoprotein granule
GO:0042645 C mitochondrial nucleoid
GO:0045333 P cellular respiration
5952 O_BomoASG15358_complete:A_BomoASG_c29046_g2_i1
133bp
5953 O_BomoASG15359_internal:A_BomoASG_c29047_g1_i2
233bp
 dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
5954 O_BomoASG1535_internal:A_BomoASG_c9510_g1_i1
100bp
 PREDICTED:_von_Willebrand_factor_A_domain-containing_protein_8_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
5955 O_BomoASG15360_5prime_partial:A_BomoASG_c29048_g1_i1
116bp
 LETM1_domain-containing_protein_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043022 F ribosome binding
5956 O_BomoASG15361_complete:A_BomoASG_c29048_g1_i2
359bp
 LETM1_domain-containing_protein_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043022 F ribosome binding
5957 O_BomoASG15362_3prime_partial:A_BomoASG_c29049_g1_i1
287bp
 tRNA_(guanine-N(7)-)-methyltransferase_non-catalytic_subunit_wuho_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008176 F tRNA (guanine-N7-)-methyltransferase activity
GO:0030488 P tRNA methylation
GO:0036265 P RNA (guanine-N7)-methylation
5958 O_BomoASG15363_internal:A_BomoASG_c29049_g1_i2
178bp
 tRNA_(guanine-N(7)-)-methyltransferase_non-catalytic_subunit_wuho_[Bombyx_mori]
GO:0001673 C male germ cell nucleus
GO:0001674 C female germ cell nucleus
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008033 P tRNA processing
GO:0030154 P cell differentiation
GO:0030488 P tRNA methylation
GO:0036265 P RNA (guanine-N7)-methylation
GO:0048477 P oogenesis
5959 O_BomoASG15364_internal:A_BomoASG_c29050_g1_i1
393bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005518 F collagen binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005583 C fibrillar collagen trimer
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006641 P triglyceride metabolic process
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008201 F heparin binding
GO:0016337 P cell-cell adhesion
GO:0030036 P actin cytoskeleton organization
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0031012 C extracellular matrix
GO:0032963 P collagen metabolic process
GO:0043206 P supramolecular fiber organization
GO:0043506 P regulation of JUN kinase activity
GO:0048251 P elastic fiber assembly
GO:0070062 C extracellular exosome
5960 O_BomoASG15365_internal:A_BomoASG_c29050_g2_i1
184bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
5961 O_BomoASG15366_complete:A_BomoASG_c29052_g1_i1
103bp
5962 O_BomoASG15367_internal:A_BomoASG_c29053_g1_i1
128bp
 intraflagellar_transport_protein_140_homolog_[Bombyx_mori]
GO:0001750 C photoreceptor outer segment
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008589 P regulation of smoothened signaling pathway
GO:0021532 P neural tube patterning
GO:0030030 P cell projection organization
GO:0030991 C intraciliary transport particle A
GO:0031513 C non-motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035108 P limb morphogenesis
GO:0035721 P intraciliary retrograde transport
GO:0035845 P photoreceptor cell outer segment organization
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0048705 P skeletal system morphogenesis
GO:0060041 P retina development in camera-type eye
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072001 P renal system development
GO:0072372 C cilium
GO:0097542 C ciliary tip
GO:1902017 P regulation of cilium assembly
5963 O_BomoASG15368_internal:A_BomoASG_c29053_g1_i2
433bp
 intraflagellar_transport_protein_140_homolog_[Bombyx_mori]
GO:0001750 C photoreceptor outer segment
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008589 P regulation of smoothened signaling pathway
GO:0021532 P neural tube patterning
GO:0030030 P cell projection organization
GO:0030991 C intraciliary transport particle A
GO:0031513 C non-motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035108 P limb morphogenesis
GO:0035721 P intraciliary retrograde transport
GO:0035845 P photoreceptor cell outer segment organization
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0048705 P skeletal system morphogenesis
GO:0060041 P retina development in camera-type eye
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072001 P renal system development
GO:0072372 C cilium
GO:0097542 C ciliary tip
GO:1902017 P regulation of cilium assembly
5964 O_BomoASG15369_3prime_partial:A_BomoASG_c29054_g1_i1
304bp
 verprolin_isoform_X2_[Bombyx_mori]
GO:0001105 F transcription coactivator activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0045844 P positive regulation of striated muscle tissue development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051145 P smooth muscle cell differentiation
5965 O_BomoASG1536_internal:A_BomoASG_c9510_g1_i1
100bp
5966 O_BomoASG15370_internal:A_BomoASG_c29054_g1_i2
228bp
 verprolin_isoform_X3_[Bombyx_mori]
GO:0000976 F transcription cis-regulatory region binding
GO:0001105 F transcription coactivator activity
GO:0001764 P neuron migration
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0003779 F actin binding
GO:0003785 F actin monomer binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010735 P positive regulation of transcription via serum response element binding
GO:0030036 P actin cytoskeleton organization
GO:0030900 P forebrain development
GO:0031175 P neuron projection development
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043522 F leucine zipper domain binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051145 P smooth muscle cell differentiation
GO:2001234 P negative regulation of apoptotic signaling pathway
5967 O_BomoASG15371_internal:A_BomoASG_c29055_g1_i1
494bp
 regulation_of_nuclear_pre-mRNA_domain-containing_protein_2-like_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
5968 O_BomoASG15372_3prime_partial:A_BomoASG_c29055_g1_i2
648bp
 regulation_of_nuclear_pre-mRNA_domain-containing_protein_2-like_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
5969 O_BomoASG15373_3prime_partial:A_BomoASG_c29055_g1_i3
615bp
 regulation_of_nuclear_pre-mRNA_domain-containing_protein_2-like_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
5970 O_BomoASG15374_complete:A_BomoASG_c29055_g1_i4
257bp
 regulation_of_nuclear_pre-mRNA_domain-containing_protein_2-like_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
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