SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4351 O_BomoASG13917_3prime_partial:A_BomoASG_c28432_g1_i6
164bp
 serine/threonine-protein_kinase_MARK2_isoform_X9_[Bombyx_mori]
4352 O_BomoASG13918_complete:A_BomoASG_c28432_g1_i6
107bp
4353 O_BomoASG13919_internal:A_BomoASG_c28433_g1_i1
390bp
 uncharacterized_protein_LOC110379170_isoform_X5_[Helicoverpa_armigera]
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0008168 F methyltransferase activity
GO:0008171 F O-methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0032259 P methylation
GO:0034587 P piRNA metabolic process
GO:0035194 P post-transcriptional gene silencing by RNA
GO:0046872 F metal ion binding
4354 O_BomoASG1391_complete:A_BomoASG_c8552_g1_i1
159bp
 uncharacterized_protein_LOC101742718_isoform_X1_[Bombyx_mori]
4355 O_BomoASG13920_3prime_partial:A_BomoASG_c28434_g1_i1
413bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
4356 O_BomoASG13921_internal:A_BomoASG_c28434_g1_i2
195bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
4357 O_BomoASG13922_complete:A_BomoASG_c28436_g1_i1
172bp
 nucleoside_diphosphate_kinase_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004550 F nucleoside diphosphate kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006165 P nucleoside diphosphate phosphorylation
GO:0006183 P GTP biosynthetic process
GO:0006228 P UTP biosynthetic process
GO:0006241 P CTP biosynthetic process
GO:0006915 P apoptotic process
GO:0009117 P nucleotide metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030308 P negative regulation of cell growth
GO:0045839 P negative regulation of mitotic nuclear division
GO:0046872 F metal ion binding
4358 O_BomoASG13923_internal:A_BomoASG_c28437_g1_i1
268bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
4359 O_BomoASG13924_complete:A_BomoASG_c28437_g1_i1
107bp
4360 O_BomoASG13925_5prime_partial:A_BomoASG_c28437_g1_i1
100bp
4361 O_BomoASG13926_complete:A_BomoASG_c28438_g2_i1
1039bp
 argonaute_2_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004521 F endoribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007279 P pole cell formation
GO:0007349 P cellularization
GO:0007367 P segment polarity determination
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0010526 P negative regulation of transposition, RNA-mediated
GO:0016032 P viral process
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0033227 P dsRNA transport
GO:0035071 P salivary gland cell autophagic cell death
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035190 P syncytial nuclear migration
GO:0035195 P gene silencing by miRNA
GO:0035197 F siRNA binding
GO:0045071 P negative regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0048102 P autophagic cell death
GO:0051607 P defense response to virus
GO:0070578 C RISC-loading complex
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0098586 P cellular response to virus
4362 O_BomoASG13927_complete:A_BomoASG_c28438_g2_i1
200bp
4363 O_BomoASG13928_3prime_partial:A_BomoASG_c28440_g1_i1
710bp
 maternal_protein_pumilio_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000900 F translation repressor activity, mRNA regulatory element binding
GO:0001709 P cell fate determination
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0007067 P mitotic cell cycle
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007281 P germ cell development
GO:0007616 P long-term memory
GO:0008258 P head involution
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016441 P posttranscriptional gene silencing
GO:0016477 P cell migration
GO:0017148 P negative regulation of translation
GO:0031594 C neuromuscular junction
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042078 P germ-line stem cell division
GO:0045727 P positive regulation of translation
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050804 P modulation of chemical synaptic transmission
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0097482 C muscle cell postsynaptic specialization
4364 O_BomoASG13929_5prime_partial:A_BomoASG_c28440_g1_i1
101bp
4365 O_BomoASG1392_internal:A_BomoASG_c8561_g1_i1
156bp
 DNA_polymerase_epsilon_catalytic_subunit_A_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008408 F 3'-5' exonuclease activity
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4366 O_BomoASG13930_complete:A_BomoASG_c28440_g1_i1
101bp
4367 O_BomoASG13931_3prime_partial:A_BomoASG_c28440_g1_i2
711bp
 maternal_protein_pumilio_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000900 F translation repressor activity, mRNA regulatory element binding
GO:0001709 P cell fate determination
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0007067 P mitotic cell cycle
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007281 P germ cell development
GO:0007616 P long-term memory
GO:0008258 P head involution
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016441 P posttranscriptional gene silencing
GO:0016477 P cell migration
GO:0017148 P negative regulation of translation
GO:0031594 C neuromuscular junction
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042078 P germ-line stem cell division
GO:0045727 P positive regulation of translation
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050804 P modulation of chemical synaptic transmission
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0097482 C muscle cell postsynaptic specialization
4368 O_BomoASG13932_complete:A_BomoASG_c28440_g1_i2
156bp
4369 O_BomoASG13933_complete:A_BomoASG_c28440_g1_i2
129bp
4370 O_BomoASG13934_5prime_partial:A_BomoASG_c28440_g1_i2
101bp
4371 O_BomoASG13935_3prime_partial:A_BomoASG_c28440_g1_i3
491bp
 maternal_protein_pumilio_isoform_X4_[Helicoverpa_armigera]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000900 F translation repressor activity, mRNA regulatory element binding
GO:0001709 P cell fate determination
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0007067 P mitotic cell cycle
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007281 P germ cell development
GO:0007616 P long-term memory
GO:0008258 P head involution
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016441 P posttranscriptional gene silencing
GO:0016477 P cell migration
GO:0017148 P negative regulation of translation
GO:0031594 C neuromuscular junction
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042078 P germ-line stem cell division
GO:0045727 P positive regulation of translation
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050804 P modulation of chemical synaptic transmission
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0097482 C muscle cell postsynaptic specialization
4372 O_BomoASG13936_5prime_partial:A_BomoASG_c28440_g1_i3
101bp
4373 O_BomoASG13937_complete:A_BomoASG_c28440_g1_i3
101bp
4374 O_BomoASG13938_complete:A_BomoASG_c28441_g1_i1
355bp
 exportin-7-B-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
4375 O_BomoASG13939_complete:A_BomoASG_c28441_g1_i1
292bp
 PREDICTED:_ran-binding_protein_17_isoform_X6_[Oryctolagus_cuniculus]
4376 O_BomoASG1393_internal:A_BomoASG_c8561_g1_i1
156bp
4377 O_BomoASG13940_complete:A_BomoASG_c28441_g1_i1
188bp
4378 O_BomoASG13941_3prime_partial:A_BomoASG_c28441_g1_i1
109bp
4379 O_BomoASG13942_5prime_partial:A_BomoASG_c28441_g1_i3
306bp
 PREDICTED:_ran-binding_protein_17_isoform_X6_[Oryctolagus_cuniculus]
4380 O_BomoASG13943_5prime_partial:A_BomoASG_c28441_g1_i3
302bp
 exportin-7-B-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
previous next from show/32479

- SilkBase 1999-2023 -