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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4141 O_BomoASG13728_complete:A_BomoASG_c28347_g1_i2
109bp
4142 O_BomoASG13729_complete:A_BomoASG_c28347_g1_i2
101bp
4143 O_BomoASG1372_internal:A_BomoASG_c8325_g1_i1
139bp
 TRAS3_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4144 O_BomoASG13730_3prime_partial:A_BomoASG_c28347_g1_i3
721bp
 protein_sel-1_homolog_2_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007219 P Notch signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030970 P retrograde protein transport, ER to cytosol
GO:0034976 P response to endoplasmic reticulum stress
GO:0036503 P ERAD pathway
GO:0036513 C Derlin-1 retrotranslocation complex
4145 O_BomoASG13731_complete:A_BomoASG_c28347_g1_i3
196bp
4146 O_BomoASG13732_complete:A_BomoASG_c28347_g1_i3
109bp
4147 O_BomoASG13733_complete:A_BomoASG_c28347_g1_i3
101bp
4148 O_BomoASG13734_3prime_partial:A_BomoASG_c28348_g1_i2
292bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
4149 O_BomoASG13735_5prime_partial:A_BomoASG_c28349_g1_i1
197bp
 intersectin-1_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0007264 P small GTPase mediated signal transduction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0019209 F kinase activator activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030139 C endocytic vesicle
GO:0032947 F molecular adaptor activity
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042327 P positive regulation of phosphorylation
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043065 P positive regulation of apoptotic process
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0048013 P ephrin receptor signaling pathway
GO:0048488 P synaptic vesicle endocytosis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070064 F proline-rich region binding
4150 O_BomoASG13736_5prime_partial:A_BomoASG_c28349_g1_i1
196bp
4151 O_BomoASG13737_internal:A_BomoASG_c28351_g2_i1
320bp
 polypeptide_N-acetylgalactosaminyltransferase_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0006493 P protein O-linked glycosylation
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0009312 P oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016266 P O-glycan processing
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0031589 P cell-substrate adhesion
GO:0033628 P regulation of cell adhesion mediated by integrin
GO:0046872 F metal ion binding
GO:0070278 P extracellular matrix constituent secretion
4152 O_BomoASG13738_3prime_partial:A_BomoASG_c28351_g2_i1
141bp
4153 O_BomoASG13739_5prime_partial:A_BomoASG_c28351_g3_i1
142bp
 polypeptide_N-acetylgalactosaminyltransferase_3_[Bombyx_mori]
4154 O_BomoASG1373_internal:A_BomoASG_c8341_g1_i1
141bp
4155 O_BomoASG13740_3prime_partial:A_BomoASG_c28351_g2_i2
222bp
 polypeptide_N-acetylgalactosaminyltransferase_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0006493 P protein O-linked glycosylation
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0009312 P oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016266 P O-glycan processing
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0031589 P cell-substrate adhesion
GO:0033628 P regulation of cell adhesion mediated by integrin
GO:0046872 F metal ion binding
GO:0070278 P extracellular matrix constituent secretion
4156 O_BomoASG13741_complete:A_BomoASG_c28353_g1_i1
161bp
 chromatin_complexes_subunit_BAP18_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
4157 O_BomoASG13742_complete:A_BomoASG_c28353_g1_i3
168bp
 chromatin_complexes_subunit_BAP18_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
4158 O_BomoASG13743_internal:A_BomoASG_c28356_g2_i1
454bp
 solute_carrier_organic_anion_transporter_family_member_2A1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015132 F prostaglandin transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043252 P sodium-independent organic anion transport
4159 O_BomoASG13744_5prime_partial:A_BomoASG_c28356_g2_i1
207bp
4160 O_BomoASG13745_complete:A_BomoASG_c28356_g2_i1
147bp
4161 O_BomoASG13746_3prime_partial:A_BomoASG_c28357_g1_i1
239bp
 protein_cramped_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
4162 O_BomoASG13747_complete:A_BomoASG_c28357_g1_i1
173bp
4163 O_BomoASG13748_5prime_partial:A_BomoASG_c28358_g1_i1
110bp
 lipid_droplet-associated_hydrolase-like_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005811 C lipid droplet
GO:0008152 P metabolic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030730 P sequestering of triglyceride
GO:0034389 P lipid droplet organization
4164 O_BomoASG13749_3prime_partial:A_BomoASG_c28359_g1_i1
295bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
4165 O_BomoASG1374_internal:A_BomoASG_c8341_g1_i1
141bp
 histone_H2A_deubiquitinase_MYSM1_isoform_X4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
4166 O_BomoASG13750_5prime_partial:A_BomoASG_c28359_g1_i1
245bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0009303 P rRNA transcription
GO:0009304 P tRNA transcription
GO:0017025 F TBP-class protein binding
GO:0046872 F metal ion binding
4167 O_BomoASG13751_complete:A_BomoASG_c28359_g1_i1
118bp
4168 O_BomoASG13752_complete:A_BomoASG_c28360_g1_i1
815bp
 eukaryotic_translation_initiation_factor_2-alpha_kinase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0017148 P negative regulation of translation
4169 O_BomoASG13753_complete:A_BomoASG_c28360_g1_i1
108bp
4170 O_BomoASG13754_complete:A_BomoASG_c28360_g1_i1
106bp
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