SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3961 O_BomoASG13566_internal:A_BomoASG_c28282_g1_i2
120bp
 sugar_transporter_ERD6-like_8_isoform_X3_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
3962 O_BomoASG13567_internal:A_BomoASG_c28282_g1_i2
120bp
3963 O_BomoASG13568_internal:A_BomoASG_c28283_g1_i1
379bp
 squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
3964 O_BomoASG13569_5prime_partial:A_BomoASG_c28283_g1_i1
114bp
3965 O_BomoASG1356_5prime_partial:A_BomoASG_c8189_g1_i1
156bp
3966 O_BomoASG13570_3prime_partial:A_BomoASG_c28283_g1_i2
828bp
 squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
3967 O_BomoASG13571_5prime_partial:A_BomoASG_c28283_g1_i2
114bp
3968 O_BomoASG13572_3prime_partial:A_BomoASG_c28285_g1_i1
999bp
 CCAAT/enhancer-binding_protein_zeta_isoform_X2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
3969 O_BomoASG13573_5prime_partial:A_BomoASG_c28285_g1_i1
200bp
3970 O_BomoASG13574_complete:A_BomoASG_c28285_g1_i1
163bp
3971 O_BomoASG13575_complete:A_BomoASG_c28285_g1_i1
152bp
3972 O_BomoASG13576_5prime_partial:A_BomoASG_c28286_g1_i1
113bp
 uncharacterized_protein_LOC101735855_[Bombyx_mori]
3973 O_BomoASG13577_complete:A_BomoASG_c28287_g1_i2
101bp
3974 O_BomoASG13578_3prime_partial:A_BomoASG_c28288_g1_i1
371bp
 UDP-N-acetylglucosamine--dolichyl-phosphate_N-acetylglucosaminephosphotransferase_isoform_X1_[Bombyx_mori]
GO:0003975 F UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity
GO:0003976 F UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006047 P UDP-N-acetylglucosamine metabolic process
GO:0006486 P protein glycosylation
GO:0006487 P protein N-linked glycosylation
GO:0006488 P dolichol-linked oligosaccharide biosynthetic process
GO:0008963 F phospho-N-acetylmuramoyl-pentapeptide-transferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0019348 P dolichol metabolic process
GO:0019408 P dolichol biosynthetic process
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0051259 P protein complex oligomerization
3975 O_BomoASG13579_internal:A_BomoASG_c28289_g1_i1
301bp
 RNA_polymerase_II_elongation_factor_Ell_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0015979 P photosynthesis
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043620 P regulation of DNA-templated transcription in response to stress
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0070063 F RNA polymerase binding
3976 O_BomoASG1357_5prime_partial:A_BomoASG_c8189_g1_i1
148bp
3977 O_BomoASG13580_3prime_partial:A_BomoASG_c28289_g1_i2
369bp
 RNA_polymerase_II_elongation_factor_Ell_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0015979 P photosynthesis
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043620 P regulation of DNA-templated transcription in response to stress
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0070063 F RNA polymerase binding
3978 O_BomoASG13581_complete:A_BomoASG_c28289_g1_i2
139bp
3979 O_BomoASG13582_internal:A_BomoASG_c28289_g1_i3
282bp
 RNA_polymerase_II_elongation_factor_Ell_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0015979 P photosynthesis
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043620 P regulation of DNA-templated transcription in response to stress
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0070063 F RNA polymerase binding
3980 O_BomoASG13583_5prime_partial:A_BomoASG_c28291_g1_i1
223bp
 non-LTR_retrotransposon_R1Bmks_ORF2_protein_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3981 O_BomoASG13584_complete:A_BomoASG_c28291_g1_i1
177bp
3982 O_BomoASG13585_5prime_partial:A_BomoASG_c28291_g1_i2
258bp
 non-LTR_retrotransposon_R1Bmks_ORF2_protein_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3983 O_BomoASG13586_complete:A_BomoASG_c28291_g1_i2
177bp
3984 O_BomoASG13587_complete:A_BomoASG_c28293_g1_i1
167bp
 PREDICTED:_UPF0547_protein_C16orf87_homolog_isoform_X3_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3985 O_BomoASG13588_complete:A_BomoASG_c28293_g1_i2
167bp
 PREDICTED:_UPF0547_protein_C16orf87_homolog_isoform_X3_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3986 O_BomoASG13589_complete:A_BomoASG_c28295_g1_i1
270bp
 deoxynucleotidyltransferase_terminal-interacting_protein_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
3987 O_BomoASG1358_5prime_partial:A_BomoASG_c8192_g1_i1
530bp
 pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
3988 O_BomoASG13590_complete:A_BomoASG_c28296_g1_i1
294bp
 potassium_voltage-gated_channel_subfamily_H_member_6-like_isoform_X7_[Bombyx_mori]
3989 O_BomoASG13591_complete:A_BomoASG_c28296_g1_i1
161bp
3990 O_BomoASG13592_complete:A_BomoASG_c28296_g1_i1
132bp
previous next from show/32479

- SilkBase 1999-2023 -