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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3001 O_BomoASG12701_internal:A_BomoASG_c27786_g1_i1
158bp
 poly(U)-binding-splicing_factor_half_pint_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001558 P regulation of cell growth
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0051726 P regulation of cell cycle
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
3002 O_BomoASG12702_complete:A_BomoASG_c27789_g1_i1
157bp
 uncharacterized_protein_LOC101736775_[Bombyx_mori]
3003 O_BomoASG12703_complete:A_BomoASG_c27789_g1_i2
157bp
 uncharacterized_protein_LOC101736775_[Bombyx_mori]
3004 O_BomoASG12704_complete:A_BomoASG_c27789_g1_i3
157bp
 uncharacterized_protein_LOC101736775_[Bombyx_mori]
3005 O_BomoASG12705_5prime_partial:A_BomoASG_c27789_g1_i4
138bp
 uncharacterized_protein_LOC101736775_[Bombyx_mori]
3006 O_BomoASG12706_complete:A_BomoASG_c27793_g1_i1
429bp
 GPI_mannosyltransferase_1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
3007 O_BomoASG12707_5prime_partial:A_BomoASG_c27794_g1_i1
257bp
 protein_EFR3_homolog_cmp44E_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007268 P chemical synaptic transmission
GO:0007602 P phototransduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0030100 P regulation of endocytosis
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
GO:0098793 C presynapse
3008 O_BomoASG12708_complete:A_BomoASG_c27794_g1_i2
720bp
 protein_EFR3_homolog_cmp44E_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007268 P chemical synaptic transmission
GO:0007602 P phototransduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0030100 P regulation of endocytosis
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
GO:0098793 C presynapse
3009 O_BomoASG12709_complete:A_BomoASG_c27794_g1_i2
261bp
3010 O_BomoASG1270_5prime_partial:A_BomoASG_c7615_g1_i1
115bp
3011 O_BomoASG12710_complete:A_BomoASG_c27794_g1_i2
201bp
3012 O_BomoASG12711_complete:A_BomoASG_c27794_g1_i2
124bp
3013 O_BomoASG12712_complete:A_BomoASG_c27795_g1_i1
441bp
 DNA_polymerase_delta_subunit_2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043625 C delta DNA polymerase complex
GO:0071897 P DNA biosynthetic process
3014 O_BomoASG12713_internal:A_BomoASG_c27796_g1_i1
831bp
 rho_GTPase-activating_protein_190_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007415 P defasciculation of motor neuron axon
GO:0016319 P mushroom body development
GO:0030215 F semaphorin receptor binding
GO:0043547 P positive regulation of GTPase activity
GO:0045792 P negative regulation of cell size
GO:0050770 P regulation of axonogenesis
3015 O_BomoASG12714_complete:A_BomoASG_c27796_g1_i1
159bp
3016 O_BomoASG12715_complete:A_BomoASG_c27796_g1_i1
154bp
3017 O_BomoASG12716_internal:A_BomoASG_c27796_g1_i2
682bp
 rho_GTPase-activating_protein_190_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007415 P defasciculation of motor neuron axon
GO:0016319 P mushroom body development
GO:0030215 F semaphorin receptor binding
GO:0043547 P positive regulation of GTPase activity
GO:0045792 P negative regulation of cell size
GO:0050770 P regulation of axonogenesis
3018 O_BomoASG12717_complete:A_BomoASG_c27796_g1_i2
159bp
3019 O_BomoASG12718_complete:A_BomoASG_c27796_g1_i2
154bp
3020 O_BomoASG12719_3prime_partial:A_BomoASG_c27797_g1_i1
327bp
 protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0004500 F dopamine beta-monooxygenase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006584 P catecholamine metabolic process
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
3021 O_BomoASG1271_3prime_partial:A_BomoASG_c7615_g1_i2
487bp
 protein_dead_ringer_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000976 F transcription cis-regulatory region binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007517 P muscle organ development
GO:0008049 P male courtship behavior
GO:0009880 P embryonic pattern specification
GO:0009952 P anterior/posterior pattern specification
GO:0010906 P regulation of glucose metabolic process
GO:0042063 P gliogenesis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045924 P regulation of female receptivity
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
3022 O_BomoASG12720_5prime_partial:A_BomoASG_c27797_g1_i1
111bp
3023 O_BomoASG12721_internal:A_BomoASG_c27797_g1_i3
259bp
 protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0004500 F dopamine beta-monooxygenase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006584 P catecholamine metabolic process
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
3024 O_BomoASG12722_5prime_partial:A_BomoASG_c27797_g1_i3
111bp
3025 O_BomoASG12723_complete:A_BomoASG_c27798_g1_i1
342bp
 activator_of_90_kDa_heat_shock_protein_ATPase_homolog_1_[Bombyx_mori]
GO:0001671 F ATPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006950 P response to stress
GO:0032781 P positive regulation of ATP-dependent activity
GO:0051087 F chaperone binding
GO:0070062 C extracellular exosome
3026 O_BomoASG12724_complete:A_BomoASG_c27800_g1_i1
238bp
 mediator_of_RNA_polymerase_II_transcription_subunit_19_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
3027 O_BomoASG12725_3prime_partial:A_BomoASG_c27800_g1_i2
194bp
 mediator_of_RNA_polymerase_II_transcription_subunit_19_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
3028 O_BomoASG12726_internal:A_BomoASG_c27801_g1_i1
348bp
 PHD_finger_protein_rhinoceros_[Bombyx_mori]
3029 O_BomoASG12727_5prime_partial:A_BomoASG_c27801_g1_i1
114bp
3030 O_BomoASG12728_5prime_partial:A_BomoASG_c27802_g1_i1
182bp
 lisH_domain_and_HEAT_repeat-containing_protein_KIAA1468_[Bombyx_mori]
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