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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1651 O_BomoASG11487_complete:A_BomoASG_c27024_g1_i2
111bp
1652 O_BomoASG11488_complete:A_BomoASG_c27024_g1_i2
103bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1653 O_BomoASG11489_internal:A_BomoASG_c27025_g1_i1
485bp
 ATP-binding_cassette_sub-family_D_member_2_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000166 F nucleotide binding
GO:0005324 F long-chain fatty acid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005829 C cytosol
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0015909 P long-chain fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0032000 P positive regulation of fatty acid beta-oxidation
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0055085 P transmembrane transport
1654 O_BomoASG1148_internal:A_BomoASG_c6737_g1_i1
209bp
 nucleic-acid-binding_protein_from_transposon_x-element_[Lasius_niger]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
1655 O_BomoASG11490_complete:A_BomoASG_c27025_g1_i1
193bp
1656 O_BomoASG11491_complete:A_BomoASG_c27025_g1_i1
149bp
1657 O_BomoASG11492_3prime_partial:A_BomoASG_c27026_g1_i1
1131bp
 ribosome_biogenesis_protein_BMS1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006364 P rRNA processing
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0072686 C mitotic spindle
1658 O_BomoASG11493_complete:A_BomoASG_c27026_g1_i1
132bp
1659 O_BomoASG11494_complete:A_BomoASG_c27026_g1_i1
106bp
1660 O_BomoASG11495_internal:A_BomoASG_c27026_g1_i2
725bp
 ribosome_biogenesis_protein_BMS1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0044822 F RNA binding
1661 O_BomoASG11496_complete:A_BomoASG_c27026_g1_i2
106bp
1662 O_BomoASG11497_complete:A_BomoASG_c27028_g1_i1
217bp
 deoxyribodipyrimidine_photo-lyase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003904 F deoxyribodipyrimidine photo-lyase activity
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016829 F lyase activity
GO:0018298 P protein-chromophore linkage
1663 O_BomoASG11498_internal:A_BomoASG_c27028_g1_i2
197bp
 deoxyribodipyrimidine_photo-lyase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003904 F deoxyribodipyrimidine photo-lyase activity
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016829 F lyase activity
GO:0018298 P protein-chromophore linkage
1664 O_BomoASG11499_5prime_partial:A_BomoASG_c27028_g2_i1
200bp
 deoxyribodipyrimidine_photo-lyase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003904 F deoxyribodipyrimidine photo-lyase activity
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016829 F lyase activity
GO:0018298 P protein-chromophore linkage
1665 O_BomoASG1149_5prime_partial:A_BomoASG_c6738_g1_i1
214bp
 uncharacterized_protein_LOC101741653_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0005615 C extracellular space
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0051603 P proteolysis involved in cellular protein catabolic process
1666 O_BomoASG114_3prime_partial:A_BomoASG_c696_g2_i1
146bp
 rotatin_isoform_X2_[Bombyx_mori]
1667 O_BomoASG11500_5prime_partial:A_BomoASG_c27030_g1_i1
633bp
 kinase_D-interacting_substrate_of_220_kDa_isoform_X2_[Bombyx_mori]
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019887 F protein kinase regulator activity
GO:0030165 F PDZ domain binding
GO:0038180 P nerve growth factor signaling pathway
GO:0045859 P regulation of protein kinase activity
1668 O_BomoASG11501_complete:A_BomoASG_c27030_g1_i1
193bp
1669 O_BomoASG11502_3prime_partial:A_BomoASG_c27030_g1_i1
109bp
1670 O_BomoASG11503_5prime_partial:A_BomoASG_c27030_g1_i3
869bp
 kinase_D-interacting_substrate_of_220_kDa_isoform_X2_[Bombyx_mori]
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019887 F protein kinase regulator activity
GO:0030165 F PDZ domain binding
GO:0038180 P nerve growth factor signaling pathway
GO:0045859 P regulation of protein kinase activity
1671 O_BomoASG11504_complete:A_BomoASG_c27030_g1_i3
129bp
1672 O_BomoASG11505_3prime_partial:A_BomoASG_c27030_g1_i3
109bp
1673 O_BomoASG11506_complete:A_BomoASG_c27032_g1_i1
339bp
 Rad51_homolog_[Bombyx_mori]
GO:0000150 F DNA strand exchange activity
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000730 P DNA recombinase assembly
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000800 C lateral element
GO:0001932 P regulation of protein phosphorylation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004520 F endodeoxyribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006259 P DNA metabolic process
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006281 P DNA repair
GO:0006312 P mitotic recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008022 F protein C-terminus binding
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0010212 P response to ionizing radiation
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0010833 P telomere maintenance via telomere lengthening
GO:0016605 C PML body
GO:0031297 P replication fork processing
GO:0032200 P telomere organization
GO:0035861 C site of double-strand break
GO:0042148 P strand invasion
GO:0042802 F identical protein binding
GO:0043142 F single-stranded DNA helicase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051106 P positive regulation of DNA ligation
GO:0051260 P protein homooligomerization
GO:0070182 F DNA polymerase binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0071312 P cellular response to alkaloid
GO:0071479 P cellular response to ionizing radiation
GO:0072711 P cellular response to hydroxyurea
GO:0072757 P cellular response to camptothecin
GO:1990414 P replication-born double-strand break repair via sister chromatid exchange
GO:1990426 P mitotic recombination-dependent replication fork processing
1674 O_BomoASG11507_3prime_partial:A_BomoASG_c27033_g1_i1
237bp
 phosducin-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
1675 O_BomoASG11508_internal:A_BomoASG_c27034_g1_i1
281bp
 uncharacterized_protein_LOC101738540_[Bombyx_mori]
1676 O_BomoASG11509_complete:A_BomoASG_c27035_g1_i1
807bp
 speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016180 P snRNA processing
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0050265 F RNA uridylyltransferase activity
GO:0071044 P histone mRNA catabolic process
GO:0098789 P pre-mRNA cleavage required for polyadenylation
1677 O_BomoASG1150_internal:A_BomoASG_c6751_g2_i1
143bp
 putative_inorganic_phosphate_cotransporter_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
1678 O_BomoASG11510_complete:A_BomoASG_c27035_g1_i1
190bp
1679 O_BomoASG11511_complete:A_BomoASG_c27035_g1_i1
105bp
1680 O_BomoASG11512_complete:A_BomoASG_c27035_g1_i2
807bp
 speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016180 P snRNA processing
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0050265 F RNA uridylyltransferase activity
GO:0071044 P histone mRNA catabolic process
GO:0098789 P pre-mRNA cleavage required for polyadenylation
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