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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9691 O_BomoSK18723_3prime_partial:A_BomoSK_comp14164_c0_seq3
422bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
9692 O_BomoSK18724_5prime_partial:A_BomoSK_comp14164_c0_seq3
404bp
9693 O_BomoSK18725_complete:A_BomoSK_comp14164_c0_seq3
359bp
9694 O_BomoSK18726_complete:A_BomoSK_comp14164_c0_seq4
467bp
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
9695 O_BomoSK18727_3prime_partial:A_BomoSK_comp14164_c0_seq5
480bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
9696 O_BomoSK18728_5prime_partial:A_BomoSK_comp14164_c0_seq5
428bp
9697 O_BomoSK18729_complete:A_BomoSK_comp14164_c0_seq5
383bp
9698 O_BomoSK1872_complete:A_BomoSK_comp4689_c0_seq1
193bp
 hypothetical_protein_KGM_10035_[Danaus_plexippus]
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009411 P response to UV
GO:0019985 P translesion synthesis
GO:0048471 C perinuclear region of cytoplasm
GO:0051297 P centrosome cycle
GO:0051726 P regulation of cell cycle
9699 O_BomoSK18730_3prime_partial:A_BomoSK_comp14164_c0_seq6
816bp
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
9700 O_BomoSK18731_5prime_partial:A_BomoSK_comp14164_c0_seq6
428bp
9701 O_BomoSK18732_complete:A_BomoSK_comp14164_c0_seq6
383bp
9702 O_BomoSK18733_internal:A_BomoSK_comp14165_c0_seq1
111bp
9703 O_BomoSK18734_internal:A_BomoSK_comp14165_c0_seq2
131bp
9704 O_BomoSK18735_complete:A_BomoSK_comp14166_c0_seq1
733bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
9705 O_BomoSK18736_complete:A_BomoSK_comp14166_c0_seq1
128bp
9706 O_BomoSK18737_complete:A_BomoSK_comp14166_c0_seq1
103bp
9707 O_BomoSK18738_complete:A_BomoSK_comp14166_c0_seq2
617bp
GO:0000335 P negative regulation of transposition, DNA-mediated
GO:0000785 C chromatin
GO:0000791 C euchromatin
GO:0001709 P cell fate determination
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006342 P heterochromatin assembly
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0010369 C chromocenter
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0016441 P posttranscriptional gene silencing
GO:0030718 P germ-line stem cell population maintenance
GO:0031047 P gene silencing by RNA
GO:0031933 C obsolete telomeric heterochromatin
GO:0042078 P germ-line stem cell division
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048133 P male germ-line stem cell asymmetric division
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0070725 C Yb body
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0090309 P positive regulation of DNA methylation-dependent heterochromatin assembly
9708 O_BomoSK18739_complete:A_BomoSK_comp14166_c0_seq2
128bp
9709 O_BomoSK1873_complete:A_BomoSK_comp4690_c0_seq1
207bp
 PREDICTED:_mpv17-like_protein_2_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
9710 O_BomoSK18740_complete:A_BomoSK_comp14166_c0_seq2
103bp
9711 O_BomoSK18741_complete:A_BomoSK_comp14166_c0_seq3
900bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
9712 O_BomoSK18742_complete:A_BomoSK_comp14166_c0_seq3
128bp
9713 O_BomoSK18743_complete:A_BomoSK_comp14166_c0_seq3
103bp
9714 O_BomoSK18744_complete:A_BomoSK_comp14167_c0_seq1
2385bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005778 C peroxisomal membrane
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0019904 F protein domain specific binding
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035195 P gene silencing by miRNA
GO:0042974 F retinoic acid receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070016 F armadillo repeat domain binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 P regulation of stem cell population maintenance
9715 O_BomoSK18745_complete:A_BomoSK_comp14167_c0_seq1
142bp
9716 O_BomoSK18746_complete:A_BomoSK_comp14167_c0_seq3
2410bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
9717 O_BomoSK18747_complete:A_BomoSK_comp14167_c0_seq3
129bp
9718 O_BomoSK18748_complete:A_BomoSK_comp14169_c0_seq2
317bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0030529 C ribonucleoprotein complex
9719 O_BomoSK18749_complete:A_BomoSK_comp14169_c0_seq2
121bp
9720 O_BomoSK1874_internal:A_BomoSK_comp4691_c0_seq1
436bp
 PREDICTED:_meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
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