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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9721 O_BomoSK18750_complete:A_BomoSK_comp14169_c0_seq4
317bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0030529 C ribonucleoprotein complex
9722 O_BomoSK18751_complete:A_BomoSK_comp14169_c0_seq4
121bp
9723 O_BomoSK18752_complete:A_BomoSK_comp14170_c0_seq1
275bp
9724 O_BomoSK18753_5prime_partial:A_BomoSK_comp14170_c1_seq1
614bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
9725 O_BomoSK18754_complete:A_BomoSK_comp14171_c0_seq1
427bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
9726 O_BomoSK18755_complete:A_BomoSK_comp14171_c0_seq1
242bp
9727 O_BomoSK18756_complete:A_BomoSK_comp14171_c0_seq1
167bp
9728 O_BomoSK18757_3prime_partial:A_BomoSK_comp14171_c0_seq2
117bp
9729 O_BomoSK18758_5prime_partial:A_BomoSK_comp14172_c1_seq1
196bp
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008013 F beta-catenin binding
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0098793 C presynapse
9730 O_BomoSK18759_5prime_partial:A_BomoSK_comp14172_c1_seq1
193bp
9731 O_BomoSK1875_internal:A_BomoSK_comp4691_c0_seq2
322bp
 PREDICTED:_meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0007143 P female meiotic nuclear division
GO:0010468 P regulation of gene expression
GO:0010923 P negative regulation of phosphatase activity
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
9732 O_BomoSK18760_complete:A_BomoSK_comp14173_c0_seq1
756bp
GO:0003876 F AMP deaminase activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0043101 P purine-containing compound salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
9733 O_BomoSK18761_complete:A_BomoSK_comp14173_c0_seq1
267bp
9734 O_BomoSK18762_complete:A_BomoSK_comp14173_c0_seq1
109bp
9735 O_BomoSK18763_complete:A_BomoSK_comp14173_c0_seq1
105bp
9736 O_BomoSK18764_complete:A_BomoSK_comp14173_c0_seq2
753bp
GO:0003876 F AMP deaminase activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0043101 P purine-containing compound salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
9737 O_BomoSK18765_complete:A_BomoSK_comp14173_c0_seq2
267bp
9738 O_BomoSK18766_complete:A_BomoSK_comp14173_c0_seq2
109bp
9739 O_BomoSK18767_complete:A_BomoSK_comp14173_c0_seq2
105bp
9740 O_BomoSK18768_complete:A_BomoSK_comp14173_c0_seq3
761bp
GO:0003876 F AMP deaminase activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0043101 P purine-containing compound salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
9741 O_BomoSK18769_complete:A_BomoSK_comp14173_c0_seq3
267bp
9742 O_BomoSK1876_internal:A_BomoSK_comp4694_c0_seq1
288bp
 PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
9743 O_BomoSK18770_complete:A_BomoSK_comp14173_c0_seq3
109bp
9744 O_BomoSK18771_complete:A_BomoSK_comp14173_c0_seq3
105bp
9745 O_BomoSK18772_complete:A_BomoSK_comp14173_c0_seq4
756bp
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
9746 O_BomoSK18773_complete:A_BomoSK_comp14173_c0_seq4
267bp
9747 O_BomoSK18774_complete:A_BomoSK_comp14173_c0_seq4
109bp
9748 O_BomoSK18775_complete:A_BomoSK_comp14173_c0_seq4
105bp
9749 O_BomoSK18776_complete:A_BomoSK_comp14173_c0_seq5
753bp
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
9750 O_BomoSK18777_complete:A_BomoSK_comp14173_c0_seq5
267bp
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