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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6991 O_BomoSK16293_5prime_partial:A_BomoSK_comp13851_c0_seq1
262bp
6992 O_BomoSK16294_3prime_partial:A_BomoSK_comp13851_c0_seq1
226bp
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
6993 O_BomoSK16295_5prime_partial:A_BomoSK_comp13851_c0_seq1
106bp
6994 O_BomoSK16296_3prime_partial:A_BomoSK_comp13851_c0_seq2
304bp
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
6995 O_BomoSK16297_5prime_partial:A_BomoSK_comp13851_c0_seq2
262bp
6996 O_BomoSK16298_5prime_partial:A_BomoSK_comp13851_c0_seq2
106bp
6997 O_BomoSK16299_internal:A_BomoSK_comp13852_c0_seq1
398bp
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005844 C polysome
GO:0006412 P translation
GO:0006417 P regulation of translation
GO:0008135 F translation factor activity, RNA binding
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
6998 O_BomoSK1629_5prime_partial:A_BomoSK_comp4434_c0_seq1
149bp
6999 O_BomoSK162_5prime_partial:A_BomoSK_comp530_c0_seq1
107bp
 type_I_restriction-modification_system_methyltransferase_subunit_[Methanolobus_tindarius]
7000 O_BomoSK16300_5prime_partial:A_BomoSK_comp13852_c0_seq1
123bp
7001 O_BomoSK16301_internal:A_BomoSK_comp13853_c0_seq1
1469bp
GO:0004872 F signaling receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005905 C clathrin-coated pit
GO:0006766 P vitamin metabolic process
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007568 P aging
GO:0010165 P response to X-ray
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016324 C apical plasma membrane
GO:0017124 F SH3 domain binding
GO:0020028 P endocytic hemoglobin import into cell
GO:0030165 F PDZ domain binding
GO:0030492 F hemoglobin binding
GO:0031100 P animal organ regeneration
GO:0031526 C brush border membrane
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0033280 P response to vitamin D
GO:0042493 P response to xenobiotic stimulus
GO:0042562 F hormone binding
GO:0042953 P lipoprotein transport
GO:0042954 F obsolete lipoprotein transporter activity
GO:0043234 C protein-containing complex
GO:0045056 P transcytosis
GO:0045121 C membrane raft
GO:0046872 F metal ion binding
GO:0046879 P hormone secretion
GO:0050750 F low-density lipoprotein particle receptor binding
7002 O_BomoSK16302_complete:A_BomoSK_comp13853_c0_seq1
172bp
7003 O_BomoSK16303_complete:A_BomoSK_comp13853_c0_seq1
122bp
7004 O_BomoSK16304_internal:A_BomoSK_comp13853_c0_seq2
1352bp
GO:0004872 F signaling receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005905 C clathrin-coated pit
GO:0006766 P vitamin metabolic process
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007568 P aging
GO:0010165 P response to X-ray
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016324 C apical plasma membrane
GO:0017124 F SH3 domain binding
GO:0020028 P endocytic hemoglobin import into cell
GO:0030165 F PDZ domain binding
GO:0030492 F hemoglobin binding
GO:0031100 P animal organ regeneration
GO:0031526 C brush border membrane
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0033280 P response to vitamin D
GO:0042493 P response to xenobiotic stimulus
GO:0042562 F hormone binding
GO:0042953 P lipoprotein transport
GO:0042954 F obsolete lipoprotein transporter activity
GO:0043234 C protein-containing complex
GO:0045056 P transcytosis
GO:0045121 C membrane raft
GO:0046872 F metal ion binding
GO:0046879 P hormone secretion
GO:0050750 F low-density lipoprotein particle receptor binding
7005 O_BomoSK16305_complete:A_BomoSK_comp13853_c0_seq2
172bp
7006 O_BomoSK16306_internal:A_BomoSK_comp13853_c0_seq3
1644bp
GO:0004872 F signaling receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005905 C clathrin-coated pit
GO:0006766 P vitamin metabolic process
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007568 P aging
GO:0010165 P response to X-ray
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016324 C apical plasma membrane
GO:0017124 F SH3 domain binding
GO:0020028 P endocytic hemoglobin import into cell
GO:0030165 F PDZ domain binding
GO:0030492 F hemoglobin binding
GO:0031100 P animal organ regeneration
GO:0031526 C brush border membrane
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0033280 P response to vitamin D
GO:0042493 P response to xenobiotic stimulus
GO:0042562 F hormone binding
GO:0042953 P lipoprotein transport
GO:0042954 F obsolete lipoprotein transporter activity
GO:0043234 C protein-containing complex
GO:0045056 P transcytosis
GO:0045121 C membrane raft
GO:0046872 F metal ion binding
GO:0046879 P hormone secretion
GO:0050750 F low-density lipoprotein particle receptor binding
7007 O_BomoSK16307_complete:A_BomoSK_comp13853_c0_seq3
324bp
7008 O_BomoSK16308_complete:A_BomoSK_comp13853_c0_seq3
257bp
7009 O_BomoSK16309_complete:A_BomoSK_comp13853_c0_seq3
241bp
7010 O_BomoSK1630_internal:A_BomoSK_comp4436_c0_seq1
312bp
7011 O_BomoSK16310_complete:A_BomoSK_comp13853_c0_seq3
216bp
7012 O_BomoSK16311_complete:A_BomoSK_comp13853_c0_seq3
173bp
7013 O_BomoSK16312_complete:A_BomoSK_comp13853_c0_seq3
166bp
7014 O_BomoSK16313_complete:A_BomoSK_comp13853_c0_seq3
161bp
7015 O_BomoSK16314_complete:A_BomoSK_comp13853_c0_seq3
128bp
7016 O_BomoSK16315_complete:A_BomoSK_comp13853_c0_seq3
127bp
7017 O_BomoSK16316_complete:A_BomoSK_comp13853_c0_seq3
126bp
7018 O_BomoSK16317_complete:A_BomoSK_comp13853_c0_seq3
107bp
7019 O_BomoSK16318_complete:A_BomoSK_comp13853_c0_seq3
101bp
7020 O_BomoSK16319_complete:A_BomoSK_comp13854_c0_seq1
198bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
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