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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7021 O_BomoSK1631_internal:A_BomoSK_comp4436_c0_seq1
312bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_prolow-density_lipoprotein_receptor-related_protein_1-like_[Papilio_xuthus]
GO:0005509 F calcium ion binding
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
7022 O_BomoSK16320_complete:A_BomoSK_comp13854_c0_seq2
198bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
7023 O_BomoSK16321_3prime_partial:A_BomoSK_comp13856_c0_seq1
593bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
7024 O_BomoSK16322_complete:A_BomoSK_comp13856_c0_seq1
135bp
7025 O_BomoSK16323_complete:A_BomoSK_comp13856_c0_seq1
108bp
7026 O_BomoSK16324_5prime_partial:A_BomoSK_comp13856_c0_seq1
100bp
7027 O_BomoSK16325_3prime_partial:A_BomoSK_comp13856_c0_seq2
614bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
7028 O_BomoSK16326_complete:A_BomoSK_comp13856_c0_seq2
135bp
7029 O_BomoSK16327_5prime_partial:A_BomoSK_comp13856_c0_seq2
100bp
7030 O_BomoSK16328_3prime_partial:A_BomoSK_comp13856_c0_seq3
431bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
7031 O_BomoSK16329_5prime_partial:A_BomoSK_comp13856_c0_seq3
100bp
7032 O_BomoSK1632_5prime_partial:A_BomoSK_comp4436_c0_seq1
154bp
7033 O_BomoSK16330_3prime_partial:A_BomoSK_comp13856_c0_seq4
457bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
7034 O_BomoSK16331_5prime_partial:A_BomoSK_comp13856_c0_seq4
100bp
7035 O_BomoSK16332_5prime_partial:A_BomoSK_comp13857_c0_seq1
150bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:1901998 P toxin transport
7036 O_BomoSK16333_5prime_partial:A_BomoSK_comp13857_c0_seq2
408bp
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
7037 O_BomoSK16334_5prime_partial:A_BomoSK_comp13857_c0_seq2
312bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:1901998 P toxin transport
7038 O_BomoSK16335_5prime_partial:A_BomoSK_comp13857_c0_seq3
257bp
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
7039 O_BomoSK16336_3prime_partial:A_BomoSK_comp13857_c0_seq4
218bp
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
7040 O_BomoSK16337_internal:A_BomoSK_comp13858_c0_seq1
891bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000183 P rDNA heterochromatin assembly
GO:0000776 C kinetochore
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0001701 P in utero embryonic development
GO:0002218 P activation of innate immune response
GO:0002230 P positive regulation of defense response to virus by host
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0007568 P aging
GO:0008134 F transcription factor binding
GO:0010243 P response to organonitrogen compound
GO:0010817 P regulation of hormone levels
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0032403 F protein-containing complex binding
GO:0033558 F protein deacetylase activity
GO:0034613 P cellular protein localization
GO:0042754 P negative regulation of circadian rhythm
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045171 C intercellular bridge
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0051595 P response to methylglyoxal
GO:0071333 P cellular response to glucose stimulus
GO:1900181 P negative regulation of protein localization to nucleus
GO:1901675 P negative regulation of histone H3-K27 acetylation
GO:1903351 P cellular response to dopamine
GO:2000678 P negative regulation of transcription regulatory region DNA binding
7041 O_BomoSK16338_complete:A_BomoSK_comp13858_c0_seq1
108bp
7042 O_BomoSK16339_complete:A_BomoSK_comp13858_c0_seq1
101bp
7043 O_BomoSK1633_complete:A_BomoSK_comp4439_c0_seq1
247bp
 PREDICTED:_UPF0454_protein_C12orf49_homolog_[Papilio_machaon]
GO:0005576 C extracellular region
7044 O_BomoSK16340_complete:A_BomoSK_comp13859_c0_seq1
2169bp
GO:0004385 F guanylate kinase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005923 C bicellular tight junction
GO:0008022 F protein C-terminus binding
GO:0010033 P response to organic substance
GO:0016020 C membrane
GO:0019904 F protein domain specific binding
GO:0030054 C cell junction
GO:0030674 F protein-macromolecule adaptor activity
GO:0035329 P hippo signaling
GO:0046037 P GMP metabolic process
GO:0046710 P GDP metabolic process
GO:0050892 P intestinal absorption
GO:0071847 P TNFSF11-mediated signaling pathway
GO:0090557 P establishment of endothelial intestinal barrier
GO:0090559 P regulation of membrane permeability
GO:2001205 P negative regulation of osteoclast development
7045 O_BomoSK16341_complete:A_BomoSK_comp13859_c0_seq1
147bp
7046 O_BomoSK16342_complete:A_BomoSK_comp13859_c0_seq1
147bp
7047 O_BomoSK16343_complete:A_BomoSK_comp13859_c0_seq1
134bp
7048 O_BomoSK16344_complete:A_BomoSK_comp13859_c0_seq1
125bp
7049 O_BomoSK16345_complete:A_BomoSK_comp13859_c0_seq1
123bp
7050 O_BomoSK16346_complete:A_BomoSK_comp13859_c0_seq1
116bp
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