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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6541 O_BomoSK15889_complete:A_BomoSK_comp13778_c1_seq1
184bp
GO:0005737 C cytoplasm
GO:0006099 P tricarboxylic acid cycle
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030060 F L-malate dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
6542 O_BomoSK1588_complete:A_BomoSK_comp4392_c0_seq1
114bp
 flagellar_motor_protein_MotA_[Cohnella_panacarvi]
6543 O_BomoSK15890_complete:A_BomoSK_comp13778_c1_seq2
138bp
GO:0005737 C cytoplasm
GO:0006099 P tricarboxylic acid cycle
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030060 F L-malate dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
6544 O_BomoSK15891_complete:A_BomoSK_comp13779_c0_seq1
166bp
6545 O_BomoSK15892_5prime_partial:A_BomoSK_comp13780_c2_seq2
272bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
6546 O_BomoSK15893_3prime_partial:A_BomoSK_comp13780_c2_seq8
206bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
6547 O_BomoSK15894_complete:A_BomoSK_comp13780_c2_seq10
408bp
GO:0003824 F catalytic activity
GO:0004587 F ornithine-oxo-acid transaminase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006591 P ornithine metabolic process
GO:0008483 F transaminase activity
GO:0010121 P arginine catabolic process to proline via ornithine
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0022008 P neurogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0042802 F identical protein binding
GO:0055129 P L-proline biosynthetic process
6548 O_BomoSK15895_complete:A_BomoSK_comp13780_c4_seq3
408bp
GO:0003824 F catalytic activity
GO:0004587 F ornithine-oxo-acid transaminase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006591 P ornithine metabolic process
GO:0008483 F transaminase activity
GO:0010121 P arginine catabolic process to proline via ornithine
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0022008 P neurogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0042802 F identical protein binding
GO:0055129 P L-proline biosynthetic process
6549 O_BomoSK15896_complete:A_BomoSK_comp13780_c4_seq7
288bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
6550 O_BomoSK15897_complete:A_BomoSK_comp13780_c4_seq9
408bp
GO:0003824 F catalytic activity
GO:0004587 F ornithine-oxo-acid transaminase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006591 P ornithine metabolic process
GO:0008483 F transaminase activity
GO:0010121 P arginine catabolic process to proline via ornithine
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0022008 P neurogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0042802 F identical protein binding
GO:0055129 P L-proline biosynthetic process
6551 O_BomoSK15898_complete:A_BomoSK_comp13780_c4_seq10
288bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
6552 O_BomoSK15899_complete:A_BomoSK_comp13781_c0_seq1
131bp
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
6553 O_BomoSK1589_complete:A_BomoSK_comp4392_c0_seq1
103bp
 hypothetical_protein_[Eubacterium_xylanophilum]
6554 O_BomoSK158_internal:A_BomoSK_comp519_c1_seq1
166bp
 PREDICTED:_valine--tRNA_ligase_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004832 F valine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006438 P valyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016874 F ligase activity
6555 O_BomoSK15900_complete:A_BomoSK_comp13781_c0_seq2
131bp
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
6556 O_BomoSK15901_complete:A_BomoSK_comp13781_c0_seq4
209bp
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
6557 O_BomoSK15902_complete:A_BomoSK_comp13781_c0_seq5
192bp
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
6558 O_BomoSK15903_internal:A_BomoSK_comp13782_c0_seq1
342bp
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042981 P regulation of apoptotic process
GO:0044822 F RNA binding
6559 O_BomoSK15904_internal:A_BomoSK_comp13782_c0_seq1
342bp
6560 O_BomoSK15905_5prime_partial:A_BomoSK_comp13782_c0_seq2
305bp
6561 O_BomoSK15906_3prime_partial:A_BomoSK_comp13782_c0_seq2
297bp
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042981 P regulation of apoptotic process
GO:0044822 F RNA binding
6562 O_BomoSK15907_complete:A_BomoSK_comp13782_c0_seq2
101bp
6563 O_BomoSK15908_complete:A_BomoSK_comp13783_c0_seq1
405bp
6564 O_BomoSK15909_complete:A_BomoSK_comp13784_c0_seq1
609bp
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006959 P humoral immune response
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
6565 O_BomoSK1590_3prime_partial:A_BomoSK_comp4393_c0_seq1
109bp
 putative_gtpase_[Operophtera_brumata]
6566 O_BomoSK15910_complete:A_BomoSK_comp13784_c0_seq1
154bp
6567 O_BomoSK15911_complete:A_BomoSK_comp13784_c0_seq1
113bp
6568 O_BomoSK15912_complete:A_BomoSK_comp13784_c0_seq1
110bp
6569 O_BomoSK15913_complete:A_BomoSK_comp13784_c0_seq2
652bp
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006959 P humoral immune response
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
6570 O_BomoSK15914_complete:A_BomoSK_comp13784_c0_seq2
154bp
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