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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5761 O_BomoSK15186_complete:A_BomoSK_comp13653_c0_seq4
178bp
 acyl-CoA_dehydrogenase_[Thiomonas_sp._FB-Cd]
5762 O_BomoSK15187_complete:A_BomoSK_comp13653_c0_seq4
126bp
 ATP-binding_cassette_sub-family_G_member_4_[Anopheles_darlingi]
5763 O_BomoSK15188_5prime_partial:A_BomoSK_comp13654_c0_seq1
184bp
 PREDICTED:_target_of_Myb_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0015031 P protein transport
GO:0019901 F protein kinase binding
GO:0030276 F clathrin binding
GO:0045839 P negative regulation of mitotic nuclear division
GO:0070062 C extracellular exosome
5764 O_BomoSK15189_complete:A_BomoSK_comp13654_c0_seq1
112bp
 fumarate_reductase_[Desulfatitalea_sp._BRH_c12]
5765 O_BomoSK1518_5prime_partial:A_BomoSK_comp4330_c0_seq1
128bp
5766 O_BomoSK15190_5prime_partial:A_BomoSK_comp13654_c0_seq2
184bp
 PREDICTED:_target_of_Myb_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0015031 P protein transport
GO:0019901 F protein kinase binding
GO:0030276 F clathrin binding
GO:0045839 P negative regulation of mitotic nuclear division
GO:0070062 C extracellular exosome
5767 O_BomoSK15191_complete:A_BomoSK_comp13654_c0_seq2
112bp
 fumarate_reductase_[Desulfatitalea_sp._BRH_c12]
5768 O_BomoSK15192_complete:A_BomoSK_comp13655_c0_seq1
940bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_DNA_topoisomerase_I,_mitochondrial_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003918 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006265 P DNA topological change
GO:0006338 P chromatin remodeling
GO:0007059 P chromosome segregation
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0016853 F isomerase activity
GO:0030261 P chromosome condensation
GO:0031298 C replication fork protection complex
GO:0045995 P regulation of embryonic development
GO:0048477 P oogenesis
5769 O_BomoSK15193_complete:A_BomoSK_comp13655_c0_seq1
101bp
5770 O_BomoSK15194_3prime_partial:A_BomoSK_comp13655_c0_seq2
362bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_DNA_topoisomerase_I,_mitochondrial_[Bombyx_mori]
5771 O_BomoSK15195_complete:A_BomoSK_comp13655_c0_seq2
101bp
5772 O_BomoSK15196_complete:A_BomoSK_comp13659_c0_seq1
444bp
 PREDICTED:_phosphatidylcholine:ceramide_cholinephosphotransferase_2-like_isoform_X1_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0030173 C integral component of Golgi membrane
GO:0033188 F sphingomyelin synthase activity
GO:0047493 F ceramide cholinephosphotransferase activity
5773 O_BomoSK15197_complete:A_BomoSK_comp13659_c0_seq1
226bp
 formate_dehydrogenase_[Bradyrhizobiaceae_bacterium_SG-6C]
5774 O_BomoSK15198_complete:A_BomoSK_comp13659_c0_seq1
113bp
 hypothetical_protein_[Angustibacter_sp._Root456]
5775 O_BomoSK15199_complete:A_BomoSK_comp13659_c0_seq2
444bp
 PREDICTED:_phosphatidylcholine:ceramide_cholinephosphotransferase_2-like_isoform_X1_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0030173 C integral component of Golgi membrane
GO:0033188 F sphingomyelin synthase activity
GO:0047493 F ceramide cholinephosphotransferase activity
5776 O_BomoSK1519_complete:A_BomoSK_comp4331_c0_seq1
119bp
 transposase_[Attacus_atlas]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
5777 O_BomoSK151_5prime_partial:A_BomoSK_comp509_c0_seq1
196bp
 SCP-related_protein_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
5778 O_BomoSK15200_complete:A_BomoSK_comp13659_c0_seq2
226bp
 formate_dehydrogenase_[Bradyrhizobiaceae_bacterium_SG-6C]
5779 O_BomoSK15201_complete:A_BomoSK_comp13659_c0_seq2
143bp
 Uncharacterized_protein_KIAA0930-like_[Papilio_xuthus]
5780 O_BomoSK15202_complete:A_BomoSK_comp13659_c0_seq2
113bp
 hypothetical_protein_[Angustibacter_sp._Root456]
5781 O_BomoSK15203_complete:A_BomoSK_comp13659_c0_seq3
444bp
 PREDICTED:_phosphatidylcholine:ceramide_cholinephosphotransferase_2-like_isoform_X1_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0030173 C integral component of Golgi membrane
GO:0033188 F sphingomyelin synthase activity
GO:0047493 F ceramide cholinephosphotransferase activity
5782 O_BomoSK15204_complete:A_BomoSK_comp13659_c0_seq3
226bp
 formate_dehydrogenase_[Bradyrhizobiaceae_bacterium_SG-6C]
5783 O_BomoSK15205_complete:A_BomoSK_comp13659_c0_seq3
175bp
 PREDICTED:_uncharacterized_protein_KIAA0930_homolog_isoform_X1_[Bombyx_mori]
5784 O_BomoSK15206_complete:A_BomoSK_comp13659_c0_seq3
113bp
 hypothetical_protein_[Angustibacter_sp._Root456]
5785 O_BomoSK15207_complete:A_BomoSK_comp13659_c0_seq4
444bp
 PREDICTED:_phosphatidylcholine:ceramide_cholinephosphotransferase_2-like_isoform_X1_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006686 P sphingomyelin biosynthetic process
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0030173 C integral component of Golgi membrane
GO:0033188 F sphingomyelin synthase activity
GO:0047493 F ceramide cholinephosphotransferase activity
5786 O_BomoSK15208_complete:A_BomoSK_comp13659_c0_seq4
226bp
 formate_dehydrogenase_[Bradyrhizobiaceae_bacterium_SG-6C]
5787 O_BomoSK15209_complete:A_BomoSK_comp13659_c0_seq4
113bp
 hypothetical_protein_[Angustibacter_sp._Root456]
5788 O_BomoSK1520_5prime_partial:A_BomoSK_comp4332_c0_seq1
210bp
 PREDICTED:_RNA_polymerase_II_elongation_factor_Ell_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0010923 P negative regulation of phosphatase activity
GO:0015030 C Cajal body
GO:0015629 C actin cytoskeleton
GO:0016607 C nuclear speck
GO:0019902 F phosphatase binding
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0035363 C histone locus body
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0042796 P snRNA transcription by RNA polymerase III
GO:0045945 P positive regulation of transcription by RNA polymerase III
5789 O_BomoSK15210_complete:A_BomoSK_comp13659_c0_seq4
112bp
 PREDICTED:_uncharacterized_protein_LOC101736574_isoform_X2_[Bombyx_mori]
5790 O_BomoSK15211_5prime_partial:A_BomoSK_comp13660_c0_seq1
553bp
 PREDICTED:_WD_repeat-containing_protein_47_isoform_X2_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007275 P multicellular organism development
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