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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
571 O_BomoSK10514_complete:A_BomoSK_comp12229_c0_seq2
343bp
 PREDICTED:_uncharacterized_protein_LOC106139030_[Amyelois_transitella]
572 O_BomoSK10515_complete:A_BomoSK_comp12230_c0_seq1
421bp
 PREDICTED:_ribosome_biogenesis_protein_WDR12_homolog_[Amyelois_transitella]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
GO:0070545 C PeBoW complex
573 O_BomoSK10516_complete:A_BomoSK_comp12230_c0_seq1
112bp
 PREDICTED:_sarcosine_dehydrogenase,_mitochondrial_[Stomoxys_calcitrans]
574 O_BomoSK10517_complete:A_BomoSK_comp12230_c0_seq2
302bp
 PREDICTED:_ribosome_biogenesis_protein_WDR12_homolog_[Amyelois_transitella]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
GO:0070545 C PeBoW complex
575 O_BomoSK10518_complete:A_BomoSK_comp12230_c0_seq2
112bp
 PREDICTED:_sarcosine_dehydrogenase,_mitochondrial_[Stomoxys_calcitrans]
576 O_BomoSK10519_complete:A_BomoSK_comp12231_c0_seq1
260bp
 PREDICTED:_uncharacterized_protein_LOC101741084_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008180 C COP9 signalosome
GO:0010387 P COP9 signalosome assembly
GO:0016020 C membrane
GO:0033089 P positive regulation of T cell differentiation in thymus
GO:0050862 P positive regulation of T cell receptor signaling pathway
577 O_BomoSK1051_5prime_partial:A_BomoSK_comp3840_c0_seq1
107bp
 zinc_finger_family_protein_[Populus_trichocarpa]
578 O_BomoSK10520_complete:A_BomoSK_comp12232_c0_seq1
344bp
 PREDICTED:_phosphoglycolate_phosphatase-like_[Amyelois_transitella]
GO:0000121 F glycerol-1-phosphatase activity
GO:0000287 F magnesium ion binding
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006114 P glycerol biosynthetic process
GO:0006650 P glycerophospholipid metabolic process
GO:0008152 P metabolic process
GO:0008967 F phosphoglycolate phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0043136 F glycerol-3-phosphatase activity
GO:0045721 P negative regulation of gluconeogenesis
GO:0046872 F metal ion binding
GO:0098519 F nucleotide phosphatase activity, acting on free nucleotides
579 O_BomoSK10521_internal:A_BomoSK_comp12237_c0_seq1
434bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
580 O_BomoSK10522_3prime_partial:A_BomoSK_comp12237_c0_seq1
188bp
 transcriptional_regulator_[Streptococcus_castoreus]
581 O_BomoSK10523_complete:A_BomoSK_comp12237_c0_seq1
112bp
 PREDICTED:_Bloom_syndrome_protein_isoform_X2_[Salmo_salar]
582 O_BomoSK10524_5prime_partial:A_BomoSK_comp12237_c1_seq1
536bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
583 O_BomoSK10525_complete:A_BomoSK_comp12238_c0_seq1
589bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mitochondrial_Rho_GTPase-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005829 C cytosol
GO:0007005 P mitochondrion organization
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007268 P chemical synaptic transmission
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019725 P cellular homeostasis
GO:0031122 P cytoplasmic microtubule organization
GO:0031307 C integral component of mitochondrial outer membrane
GO:0034643 P establishment of mitochondrion localization, microtubule-mediated
GO:0046872 F metal ion binding
GO:0047497 P mitochondrion transport along microtubule
GO:0048489 P synaptic vesicle transport
GO:0051646 P mitochondrion localization
GO:0097345 P mitochondrial outer membrane permeabilization
584 O_BomoSK10526_complete:A_BomoSK_comp12238_c0_seq2
630bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mitochondrial_Rho_GTPase-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005829 C cytosol
GO:0007005 P mitochondrion organization
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007268 P chemical synaptic transmission
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019725 P cellular homeostasis
GO:0031122 P cytoplasmic microtubule organization
GO:0031307 C integral component of mitochondrial outer membrane
GO:0034643 P establishment of mitochondrion localization, microtubule-mediated
GO:0046872 F metal ion binding
GO:0047497 P mitochondrion transport along microtubule
GO:0048489 P synaptic vesicle transport
GO:0051646 P mitochondrion localization
GO:0097345 P mitochondrial outer membrane permeabilization
585 O_BomoSK10527_5prime_partial:A_BomoSK_comp12239_c0_seq1
742bp
 PREDICTED:_sphingomyelin_phosphodiesterase_isoform_X1_[Bombyx_mori]
GO:0004767 F sphingomyelin phosphodiesterase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0006685 P sphingomyelin catabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0023021 P termination of signal transduction
GO:0035307 P positive regulation of protein dephosphorylation
GO:0043407 P negative regulation of MAP kinase activity
GO:0045121 C membrane raft
GO:0046513 P ceramide biosynthetic process
GO:0046872 F metal ion binding
GO:0061750 F acid sphingomyelin phosphodiesterase activity
GO:0070062 C extracellular exosome
586 O_BomoSK10528_3prime_partial:A_BomoSK_comp12240_c0_seq1
872bp
 PREDICTED:_structural_maintenance_of_chromosomes_protein_1A_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007126 P meiotic cell cycle
GO:0008280 C cohesin complex
GO:0009314 P response to radiation
GO:0030893 C meiotic cohesin complex
GO:0042770 P signal transduction in response to DNA damage
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
587 O_BomoSK10529_complete:A_BomoSK_comp12240_c0_seq1
218bp
 xylose_isomerase_[Runella_limosa]
588 O_BomoSK1052_complete:A_BomoSK_comp3841_c0_seq1
174bp
 PREDICTED:_uncharacterized_protein_LOC106117922_[Papilio_xuthus]
589 O_BomoSK10530_5prime_partial:A_BomoSK_comp12240_c0_seq1
144bp
 TetR_family_transcriptional_regulator_[Micrococcus_luteus]
590 O_BomoSK10531_complete:A_BomoSK_comp12240_c0_seq1
123bp
591 O_BomoSK10532_complete:A_BomoSK_comp12240_c0_seq1
102bp
 sodium-independent_anion_transporter_[Methanococcoides_methylutens]
592 O_BomoSK10533_5prime_partial:A_BomoSK_comp12241_c0_seq1
152bp
 PREDICTED:_uncharacterized_protein_LOC101736656_[Bombyx_mori]
593 O_BomoSK10534_complete:A_BomoSK_comp12241_c0_seq1
111bp
594 O_BomoSK10535_3prime_partial:A_BomoSK_comp12241_c0_seq1
108bp
 PREDICTED:_uncharacterized_protein_LOC101745688_[Bombyx_mori]
595 O_BomoSK10536_complete:A_BomoSK_comp12241_c0_seq2
641bp
 PREDICTED:_uncharacterized_protein_LOC106129698_[Amyelois_transitella]
596 O_BomoSK10537_complete:A_BomoSK_comp12241_c0_seq2
125bp
 hypothetical_protein_ALC56_10249_[Trachymyrmex_septentrionalis]
597 O_BomoSK10538_complete:A_BomoSK_comp12241_c0_seq2
111bp
598 O_BomoSK10539_3prime_partial:A_BomoSK_comp12241_c0_seq3
479bp
 PREDICTED:_uncharacterized_protein_LOC106129698_[Amyelois_transitella]
599 O_BomoSK1053_complete:A_BomoSK_comp3841_c0_seq1
109bp
600 O_BomoSK10540_complete:A_BomoSK_comp12241_c0_seq3
125bp
 hypothetical_protein_ALC56_10249_[Trachymyrmex_septentrionalis]
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