SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
511 O_BomoSK10460_5prime_partial:A_BomoSK_comp12205_c0_seq1
143bp
 PREDICTED:_exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
512 O_BomoSK10461_internal:A_BomoSK_comp12205_c0_seq2
208bp
513 O_BomoSK10462_5prime_partial:A_BomoSK_comp12205_c0_seq4
133bp
 PREDICTED:_exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
514 O_BomoSK10463_5prime_partial:A_BomoSK_comp12205_c0_seq4
126bp
515 O_BomoSK10464_complete:A_BomoSK_comp12206_c0_seq1
1002bp
 PREDICTED:_integrator_complex_subunit_3_homolog_[Amyelois_transitella]
516 O_BomoSK10465_complete:A_BomoSK_comp12206_c0_seq1
100bp
 hypothetical_protein_UT30_C0014G0011_[Candidatus_Uhrbacteria_bacterium_GW2011_GWF2_39_13]
517 O_BomoSK10466_complete:A_BomoSK_comp12206_c0_seq2
959bp
 hypothetical_protein_KGM_21105_[Danaus_plexippus]
518 O_BomoSK10467_complete:A_BomoSK_comp12206_c0_seq2
100bp
 hypothetical_protein_UT30_C0014G0011_[Candidatus_Uhrbacteria_bacterium_GW2011_GWF2_39_13]
519 O_BomoSK10468_3prime_partial:A_BomoSK_comp12209_c0_seq1
571bp
 PREDICTED:_v-src_sarcoma_(Schmidt-Ruppin_A-2)_viral_oncogene_homolog_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001162 F RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005791 C rough endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0008584 P male gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0014069 C postsynaptic density
GO:0015721 P bile acid and bile salt transport
GO:0016573 P histone acetylation
GO:0016922 F nuclear receptor binding
GO:0021549 P cerebellum development
GO:0030165 F PDZ domain binding
GO:0030331 F estrogen receptor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0030375 F obsolete thyroid hormone receptor coactivator activity
GO:0030425 C dendrite
GO:0030522 P intracellular receptor signaling pathway
GO:0032403 F protein-containing complex binding
GO:0032870 P cellular response to hormone stimulus
GO:0032922 P circadian regulation of gene expression
GO:0033142 F progesterone receptor binding
GO:0035257 F nuclear receptor binding
GO:0035259 F glucocorticoid receptor binding
GO:0042974 F retinoic acid receptor binding
GO:0043025 C neuronal cell body
GO:0043197 C dendritic spine
GO:0044255 P cellular lipid metabolic process
GO:0045475 P locomotor rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045925 P positive regulation of female receptivity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0048786 C presynaptic active zone
GO:0070182 F DNA polymerase binding
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
GO:2000273 P positive regulation of signaling receptor activity
GO:2000324 P positive regulation of glucocorticoid receptor signaling pathway
520 O_BomoSK10469_complete:A_BomoSK_comp12210_c0_seq1
293bp
 PREDICTED:_another_transcription_unit_protein_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035206 P regulation of hemocyte proliferation
GO:1990269 F RNA polymerase II C-terminal domain phosphoserine binding
521 O_BomoSK1046_3prime_partial:A_BomoSK_comp3833_c0_seq1
199bp
 PREDICTED:_transcriptional_repressor_p66-alpha_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001842 P neural fold formation
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006306 P DNA methylation
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010172 P embryonic body morphogenesis
GO:0012501 P programmed cell death
GO:0016581 C NuRD complex
GO:0016607 C nuclear speck
GO:0021506 P anterior neuropore closure
GO:0030674 F protein-macromolecule adaptor activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
522 O_BomoSK10470_complete:A_BomoSK_comp12210_c0_seq1
130bp
 hypothetical_protein_Csa_3G827200_[Cucumis_sativus]
523 O_BomoSK10471_complete:A_BomoSK_comp12210_c0_seq2
675bp
 PREDICTED:_another_transcription_unit_protein_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035206 P regulation of hemocyte proliferation
GO:1990269 F RNA polymerase II C-terminal domain phosphoserine binding
524 O_BomoSK10472_complete:A_BomoSK_comp12210_c0_seq2
131bp
 GNAT_family_acetyltransferase_[Actinomyces_johnsonii]
525 O_BomoSK10473_complete:A_BomoSK_comp12210_c0_seq2
131bp
 cobalamin-binding_protein_[Sphaerobacter_thermophilus]
526 O_BomoSK10474_complete:A_BomoSK_comp12210_c0_seq2
130bp
 hypothetical_protein_Csa_3G827200_[Cucumis_sativus]
527 O_BomoSK10475_complete:A_BomoSK_comp12210_c0_seq3
215bp
 PREDICTED:_another_transcription_unit_protein_isoform_X1_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035206 P regulation of hemocyte proliferation
GO:1990269 F RNA polymerase II C-terminal domain phosphoserine binding
528 O_BomoSK10476_complete:A_BomoSK_comp12210_c0_seq3
132bp
 carbohydrate_hydrolase_[[Clostridium]_cellulosi]
529 O_BomoSK10477_complete:A_BomoSK_comp12211_c0_seq1
497bp
 Putative_serine_protease_K12H4.7_[Papilio_xuthus]
GO:0004185 F serine-type carboxypeptidase activity
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008239 F dipeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0045087 P innate immune response
530 O_BomoSK10478_complete:A_BomoSK_comp12211_c0_seq1
104bp
 aspartate_aminotransferase_[Anaerostipes_sp._3_2_56FAA]
531 O_BomoSK10479_complete:A_BomoSK_comp12212_c0_seq2
288bp
 PREDICTED:_alpha/beta_hydrolase_domain-containing_protein_17B_[Papilio_xuthus]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
532 O_BomoSK1047_5prime_partial:A_BomoSK_comp3833_c0_seq1
144bp
 PREDICTED:_anoctamin-7_[Myotis_brandtii]
533 O_BomoSK10480_3prime_partial:A_BomoSK_comp12213_c0_seq1
571bp
 PREDICTED:_uncharacterized_protein_LOC101739028_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
534 O_BomoSK10481_complete:A_BomoSK_comp12213_c0_seq1
113bp
 hypothetical_protein_ER13_16380_[Brevundimonas_sp._EAKA]
535 O_BomoSK10482_complete:A_BomoSK_comp12213_c0_seq3
536bp
 PREDICTED:_uncharacterized_protein_LOC101739028_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
536 O_BomoSK10483_complete:A_BomoSK_comp12213_c0_seq3
113bp
 hypothetical_protein_ER13_16380_[Brevundimonas_sp._EAKA]
537 O_BomoSK10484_complete:A_BomoSK_comp12215_c0_seq1
224bp
 Sarah_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005759 C mitochondrial matrix
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0007126 P meiotic cell cycle
GO:0007127 P meiosis I
GO:0007143 P female meiotic nuclear division
GO:0007275 P multicellular organism development
GO:0007343 P egg activation
GO:0007610 P behavior
GO:0007616 P long-term memory
GO:0008355 P olfactory learning
GO:0008597 F calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0019722 P calcium-mediated signaling
GO:0030154 P cell differentiation
GO:0030431 P sleep
GO:0035039 P male pronucleus assembly
GO:0045924 P regulation of female receptivity
GO:0046008 P regulation of female receptivity, post-mating
GO:0048477 P oogenesis
GO:0050790 P regulation of catalytic activity
GO:0051321 P meiotic cell cycle
GO:0070884 P regulation of calcineurin-NFAT signaling cascade
538 O_BomoSK10485_complete:A_BomoSK_comp12216_c0_seq1
441bp
 PREDICTED:_uncharacterized_protein_LOC106120989_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016491 F oxidoreductase activity
GO:0048038 F quinone binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070221 P sulfide oxidation, using sulfide:quinone oxidoreductase
GO:0070224 F sulfide:quinone oxidoreductase activity
GO:0070813 P hydrogen sulfide metabolic process
539 O_BomoSK10486_5prime_partial:A_BomoSK_comp12217_c0_seq1
176bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
540 O_BomoSK10487_5prime_partial:A_BomoSK_comp12217_c0_seq2
176bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
previous next from show/33939

- SilkBase 1999-2023 -