SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4381 O_BomoSK13944_complete:A_BomoSK_comp13408_c0_seq1
270bp
 PREDICTED:_probable_protein_arginine_N-methyltransferase_6_[Plutella_xylostella]
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016740 F transferase activity
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
4382 O_BomoSK13945_complete:A_BomoSK_comp13408_c0_seq1
123bp
 PREDICTED:_protein_arginine_N-methyltransferase_6_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007552 P metamorphosis
GO:0008168 F methyltransferase activity
GO:0008170 F N-methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031056 P regulation of histone modification
GO:0032259 P methylation
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042054 F histone methyltransferase activity
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0045653 P negative regulation of megakaryocyte differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
4383 O_BomoSK13946_complete:A_BomoSK_comp13408_c0_seq2
163bp
 hypothetical_protein_KGM_17317_[Danaus_plexippus]
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
4384 O_BomoSK13947_5prime_partial:A_BomoSK_comp13408_c0_seq3
273bp
 PREDICTED:_probable_protein_arginine_N-methyltransferase_6_[Plutella_xylostella]
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016740 F transferase activity
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
4385 O_BomoSK13948_complete:A_BomoSK_comp13408_c0_seq3
123bp
 PREDICTED:_protein_arginine_N-methyltransferase_6_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007552 P metamorphosis
GO:0008168 F methyltransferase activity
GO:0008170 F N-methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031056 P regulation of histone modification
GO:0032259 P methylation
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042054 F histone methyltransferase activity
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0045653 P negative regulation of megakaryocyte differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
4386 O_BomoSK13949_complete:A_BomoSK_comp13408_c0_seq4
123bp
 PREDICTED:_protein_arginine_N-methyltransferase_6_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007552 P metamorphosis
GO:0008168 F methyltransferase activity
GO:0008170 F N-methyltransferase activity
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031056 P regulation of histone modification
GO:0032259 P methylation
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042054 F histone methyltransferase activity
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0045653 P negative regulation of megakaryocyte differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
4387 O_BomoSK1394_complete:A_BomoSK_comp4163_c0_seq1
495bp
 hypothetical_protein_KGM_02014_[Danaus_plexippus]
4388 O_BomoSK13950_5prime_partial:A_BomoSK_comp13408_c0_seq5
166bp
 hypothetical_protein_KGM_17317_[Danaus_plexippus]
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
4389 O_BomoSK13951_complete:A_BomoSK_comp13409_c0_seq1
856bp
 putative_ribosomal_RNA_methyltransferase_[Danaus_plexippus]
GO:0000453 P enzyme-directed rRNA 2'-O-methylation
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001510 P RNA methylation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008649 F rRNA methyltransferase activity
GO:0008650 F rRNA (uridine-2'-O-)-methyltransferase activity
GO:0016435 F rRNA (guanine) methyltransferase activity
GO:0016740 F transferase activity
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
4390 O_BomoSK13952_complete:A_BomoSK_comp13409_c0_seq1
110bp
4391 O_BomoSK13953_complete:A_BomoSK_comp13409_c0_seq2
856bp
 putative_ribosomal_RNA_methyltransferase_[Danaus_plexippus]
GO:0000453 P enzyme-directed rRNA 2'-O-methylation
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001510 P RNA methylation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008649 F rRNA methyltransferase activity
GO:0008650 F rRNA (uridine-2'-O-)-methyltransferase activity
GO:0016435 F rRNA (guanine) methyltransferase activity
GO:0016740 F transferase activity
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
4392 O_BomoSK13954_complete:A_BomoSK_comp13409_c0_seq2
110bp
4393 O_BomoSK13955_3prime_partial:A_BomoSK_comp13410_c0_seq1
639bp
 PREDICTED:_uncharacterized_protein_LOC101739826_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030014 C CCR4-NOT complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
4394 O_BomoSK13956_complete:A_BomoSK_comp13410_c0_seq1
202bp
4395 O_BomoSK13957_complete:A_BomoSK_comp13410_c0_seq1
161bp
4396 O_BomoSK13958_5prime_partial:A_BomoSK_comp13413_c0_seq1
466bp
 PREDICTED:_E3_ubiquitin-protein_ligase_Su(dx)_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016348 P imaginal disc-derived leg joint morphogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019904 F protein domain specific binding
GO:0019915 P lipid storage
GO:0031623 P receptor internalization
GO:0032880 P regulation of protein localization
GO:0035209 P pupal development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048190 P wing disc dorsal/ventral pattern formation
4397 O_BomoSK13959_complete:A_BomoSK_comp13413_c0_seq2
857bp
 PREDICTED:_E3_ubiquitin-protein_ligase_Su(dx)_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016348 P imaginal disc-derived leg joint morphogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019904 F protein domain specific binding
GO:0019915 P lipid storage
GO:0031623 P receptor internalization
GO:0032880 P regulation of protein localization
GO:0035209 P pupal development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048190 P wing disc dorsal/ventral pattern formation
4398 O_BomoSK1395_complete:A_BomoSK_comp4163_c0_seq1
110bp
 Integrase-recombinase_[Bacillus_thuringiensis_serovar_tochigiensis_BGSC_4Y1]
4399 O_BomoSK13960_complete:A_BomoSK_comp13414_c0_seq1
911bp
 PREDICTED:_uncharacterized_protein_LOC101742248_isoform_X1_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0016045 P detection of bacterium
GO:0016787 F hydrolase activity
GO:0043231 C intracellular membrane-bounded organelle
4400 O_BomoSK13961_complete:A_BomoSK_comp13414_c0_seq2
716bp
 PREDICTED:_uncharacterized_protein_LOC101742248_isoform_X1_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0016045 P detection of bacterium
GO:0016787 F hydrolase activity
GO:0043231 C intracellular membrane-bounded organelle
4401 O_BomoSK13962_complete:A_BomoSK_comp13414_c0_seq3
824bp
 PREDICTED:_uncharacterized_protein_LOC101742248_isoform_X4_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005975 P carbohydrate metabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0050832 P defense response to fungus
4402 O_BomoSK13963_complete:A_BomoSK_comp13414_c0_seq4
831bp
 PREDICTED:_uncharacterized_protein_LOC101742248_isoform_X4_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005975 P carbohydrate metabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0050832 P defense response to fungus
4403 O_BomoSK13964_3prime_partial:A_BomoSK_comp13417_c0_seq1
189bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4404 O_BomoSK13965_complete:A_BomoSK_comp13419_c0_seq3
317bp
 PREDICTED:_solute_carrier_family_25_member_38-B-like_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005215 F transporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006783 P heme biosynthetic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030218 P erythrocyte differentiation
4405 O_BomoSK13966_complete:A_BomoSK_comp13419_c0_seq4
294bp
 PREDICTED:_solute_carrier_family_25_member_38-B-like_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005215 F transporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006783 P heme biosynthetic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030218 P erythrocyte differentiation
4406 O_BomoSK13967_complete:A_BomoSK_comp13420_c0_seq1
864bp
 A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_like_precursor_[Bombyx_mori]
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0003073 P regulation of systemic arterial blood pressure
GO:0003674 F molecular_function
GO:0004222 F metalloendopeptidase activity
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0031012 C extracellular matrix
GO:0046872 F metal ion binding
GO:1902017 P regulation of cilium assembly
4407 O_BomoSK13968_complete:A_BomoSK_comp13422_c0_seq1
170bp
 putative_myb_transcription_factor_[Operophtera_brumata]
4408 O_BomoSK13969_complete:A_BomoSK_comp13422_c0_seq1
106bp
4409 O_BomoSK1396_internal:A_BomoSK_comp4170_c0_seq1
773bp
 PREDICTED:_inositol_1,4,5-trisphosphate_receptor_isoform_X3_[Bombyx_mori]
GO:0000280 P nuclear division
GO:0005216 F ion channel activity
GO:0005220 F inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0005262 F calcium channel activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007591 P molting cycle, chitin-based cuticle
GO:0007601 P visual perception
GO:0007608 P sensory perception of smell
GO:0007629 P flight behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016319 P mushroom body development
GO:0030322 P stabilization of membrane potential
GO:0030536 P larval feeding behavior
GO:0035071 P salivary gland cell autophagic cell death
GO:0042594 P response to starvation
GO:0048016 P inositol phosphate-mediated signaling
GO:0050896 P response to stimulus
GO:0050909 P sensory perception of taste
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051482 P positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway
GO:0055085 P transmembrane transport
GO:0055089 P fatty acid homeostasis
GO:0060259 P regulation of feeding behavior
GO:0070588 P calcium ion transmembrane transport
4410 O_BomoSK13970_5prime_partial:A_BomoSK_comp13422_c0_seq2
189bp
 putative_myb_transcription_factor_[Operophtera_brumata]
previous next from show/33939

- SilkBase 1999-2023 -