SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4141 O_BomoSK13728_complete:A_BomoSK_comp13341_c0_seq1
103bp
 PREDICTED:_probable_disease_resistance_protein_At5g63020_[Vitis_vinifera]
4142 O_BomoSK13729_5prime_partial:A_BomoSK_comp13341_c0_seq2
1719bp
 PREDICTED:_collagen_alpha-1(I)_chain-like_[Bombyx_mori]
4143 O_BomoSK1372_internal:A_BomoSK_comp4142_c0_seq1
153bp
 amino_acid_adenylation_enzyme/thioester_reductase_family_protein_[Streptomyces_sp._SM8]
4144 O_BomoSK13730_complete:A_BomoSK_comp13341_c0_seq2
182bp
 predicted_protein_[Sclerotinia_sclerotiorum_1980]
4145 O_BomoSK13731_complete:A_BomoSK_comp13341_c0_seq2
103bp
 PREDICTED:_probable_disease_resistance_protein_At5g63020_[Vitis_vinifera]
4146 O_BomoSK13732_complete:A_BomoSK_comp13342_c1_seq1
280bp
 PREDICTED:_phosphatidate_phosphatase_PPAPDC1B_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006644 P phospholipid metabolic process
GO:0007165 P signal transduction
GO:0008195 F phosphatidate phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0046839 P phospholipid dephosphorylation
4147 O_BomoSK13733_complete:A_BomoSK_comp13342_c1_seq1
127bp
 ABC_transporter_ATP-binding_protein_[Deinococcus_actinosclerus]
4148 O_BomoSK13734_complete:A_BomoSK_comp13342_c1_seq1
126bp
 hypothetical_protein_ALT_0512_[Aspergillus_lentulus]
4149 O_BomoSK13735_complete:A_BomoSK_comp13342_c1_seq2
274bp
 PREDICTED:_phosphatidate_phosphatase_PPAPDC1B_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006644 P phospholipid metabolic process
GO:0007165 P signal transduction
GO:0008195 F phosphatidate phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0046839 P phospholipid dephosphorylation
4150 O_BomoSK13736_complete:A_BomoSK_comp13342_c1_seq2
121bp
 hypothetical_protein_ADN00_04155_[Ornatilinea_apprima]
4151 O_BomoSK13737_3prime_partial:A_BomoSK_comp13343_c0_seq1
99bp
 PREDICTED:_chromosome_transmission_fidelity_protein_8_homolog_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0007049 P cell cycle
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
4152 O_BomoSK13738_internal:A_BomoSK_comp13343_c0_seq2
122bp
 PREDICTED:_chromosome_transmission_fidelity_protein_8_homolog_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0007049 P cell cycle
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
4153 O_BomoSK13739_complete:A_BomoSK_comp13344_c0_seq1
376bp
 putative_ELAV-like_protein_1_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
4154 O_BomoSK1373_internal:A_BomoSK_comp4142_c0_seq1
153bp
 PREDICTED:_microsomal_triglyceride_transfer_protein_large_subunit-like_[Bombyx_mori]
4155 O_BomoSK13740_complete:A_BomoSK_comp13344_c0_seq3
376bp
 putative_ELAV-like_protein_1_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
4156 O_BomoSK13741_complete:A_BomoSK_comp13345_c0_seq1
417bp
 PREDICTED:_uncharacterized_protein_LOC106126877_[Papilio_xuthus]
4157 O_BomoSK13742_5prime_partial:A_BomoSK_comp13347_c0_seq1
1281bp
 PREDICTED:_ribonuclease_3_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
4158 O_BomoSK13743_complete:A_BomoSK_comp13347_c0_seq1
116bp
4159 O_BomoSK13744_complete:A_BomoSK_comp13347_c0_seq1
100bp
 hypothetical_protein_[Paenibacillus_dauci]
4160 O_BomoSK13745_5prime_partial:A_BomoSK_comp13348_c0_seq1
638bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX20_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
4161 O_BomoSK13746_5prime_partial:A_BomoSK_comp13349_c1_seq1
193bp
 PREDICTED:_homeotic_protein_female_sterile_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
4162 O_BomoSK13747_internal:A_BomoSK_comp13349_c1_seq3
227bp
 PREDICTED:_homeotic_protein_female_sterile_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
4163 O_BomoSK13748_5prime_partial:A_BomoSK_comp13349_c1_seq3
109bp
 hypothetical_protein_RSAG8_05671,_partial_[Rhizoctonia_solani_AG-8_WAC10335]
4164 O_BomoSK13749_complete:A_BomoSK_comp13350_c2_seq1
316bp
 PREDICTED:_transmembrane_protein_189_isoform_X1_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0061630 F ubiquitin protein ligase activity
4165 O_BomoSK1374_5prime_partial:A_BomoSK_comp4142_c0_seq1
126bp
4166 O_BomoSK13750_complete:A_BomoSK_comp13350_c2_seq1
104bp
 mCG1042830_[Mus_musculus]
4167 O_BomoSK13751_complete:A_BomoSK_comp13350_c2_seq2
195bp
 putative_ubiquitin-conjugating_enzyme_[Danaus_plexippus]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0061630 F ubiquitin protein ligase activity
4168 O_BomoSK13752_complete:A_BomoSK_comp13350_c2_seq2
107bp
 Transmembrane_protein_189_[Papilio_xuthus]
4169 O_BomoSK13753_complete:A_BomoSK_comp13350_c2_seq3
171bp
 putative_ubiquitin-conjugating_enzyme_[Danaus_plexippus]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0061630 F ubiquitin protein ligase activity
4170 O_BomoSK13754_complete:A_BomoSK_comp13351_c0_seq1
433bp
 PREDICTED:_transcriptional_adapter_2A_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016573 P histone acetylation
GO:0035066 P positive regulation of histone acetylation
GO:0042789 P mRNA transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0070461 C SAGA-type complex
previous next from show/33939

- SilkBase 1999-2023 -