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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4171 O_BomoSK13755_5prime_partial:A_BomoSK_comp13351_c0_seq2
683bp
 PREDICTED:_cysteine-rich_protein_2-binding_protein_isoform_X2_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0008080 F N-acetyltransferase activity
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
4172 O_BomoSK13756_complete:A_BomoSK_comp13352_c1_seq2
635bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_6-like_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0022008 P neurogenesis
GO:0046982 F protein heterodimerization activity
GO:0051090 P regulation of DNA-binding transcription factor activity
GO:0051123 P RNA polymerase II preinitiation complex assembly
4173 O_BomoSK13757_3prime_partial:A_BomoSK_comp13353_c1_seq1
604bp
 PREDICTED:_extended_synaptotagmin-1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
4174 O_BomoSK13758_complete:A_BomoSK_comp13353_c1_seq2
312bp
 hypothetical_protein_RR48_09536_[Papilio_machaon]
4175 O_BomoSK13759_complete:A_BomoSK_comp13353_c1_seq2
245bp
 Aldehyde_Dehydrogenase_[Danaus_plexippus]
4176 O_BomoSK1375_complete:A_BomoSK_comp4144_c0_seq1
656bp
 PREDICTED:_sorting_nexin-29-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
4177 O_BomoSK13760_complete:A_BomoSK_comp13353_c1_seq3
525bp
 hypothetical_protein_RR48_09536_[Papilio_machaon]
4178 O_BomoSK13761_3prime_partial:A_BomoSK_comp13353_c1_seq5
610bp
 PREDICTED:_extended_synaptotagmin-1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
4179 O_BomoSK13762_complete:A_BomoSK_comp13355_c0_seq1
1514bp
 PREDICTED:_DEP_domain-containing_protein_5_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0032007 P negative regulation of TOR signaling
GO:0032403 F protein-containing complex binding
GO:0034198 P cellular response to amino acid starvation
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:1990130 C GATOR1 complex
4180 O_BomoSK13763_complete:A_BomoSK_comp13355_c0_seq2
227bp
 PREDICTED:_DEP_domain-containing_protein_5_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0032007 P negative regulation of TOR signaling
GO:0032403 F protein-containing complex binding
GO:0034198 P cellular response to amino acid starvation
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:1990130 C GATOR1 complex
4181 O_BomoSK13764_complete:A_BomoSK_comp13355_c0_seq3
1020bp
 PREDICTED:_DEP_domain-containing_protein_5_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0032007 P negative regulation of TOR signaling
GO:0032403 F protein-containing complex binding
GO:0034198 P cellular response to amino acid starvation
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:1990130 C GATOR1 complex
4182 O_BomoSK13765_5prime_partial:A_BomoSK_comp13355_c0_seq4
530bp
 PREDICTED:_DEP_domain-containing_protein_5_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0032007 P negative regulation of TOR signaling
GO:0032403 F protein-containing complex binding
GO:0034198 P cellular response to amino acid starvation
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:1990130 C GATOR1 complex
4183 O_BomoSK13766_3prime_partial:A_BomoSK_comp13356_c0_seq1
236bp
 PREDICTED:_protein_abrupt-like_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
4184 O_BomoSK13767_3prime_partial:A_BomoSK_comp13356_c0_seq2
236bp
 PREDICTED:_protein_abrupt-like_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
4185 O_BomoSK13768_5prime_partial:A_BomoSK_comp13356_c1_seq1
182bp
 PREDICTED:_protein_jim_lovell-like_isoform_X2_[Amyelois_transitella]
4186 O_BomoSK13769_5prime_partial:A_BomoSK_comp13356_c1_seq2
186bp
 PREDICTED:_protein_jim_lovell-like_isoform_X1_[Amyelois_transitella]
4187 O_BomoSK1376_complete:A_BomoSK_comp4144_c0_seq1
100bp
4188 O_BomoSK13770_complete:A_BomoSK_comp13358_c0_seq1
423bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
4189 O_BomoSK13771_complete:A_BomoSK_comp13358_c0_seq2
243bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000139 C Golgi membrane
GO:0000922 C spindle pole
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006486 P protein glycosylation
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007020 P microtubule nucleation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007092 P positive regulation of ubiquitin protein ligase activity
GO:0008017 F microtubule binding
GO:0008356 P asymmetric cell division
GO:0010507 P negative regulation of autophagy
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0019905 F syntaxin binding
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0032091 P negative regulation of protein binding
GO:0032580 C Golgi cisterna membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048208 P COPII vesicle coating
GO:0051225 P spindle assembly
GO:0051289 P protein homotetramerization
GO:0051297 P centrosome cycle
GO:0051301 P cell division
GO:0060050 P positive regulation of protein glycosylation
GO:0061676 F importin-alpha family protein binding
GO:0072686 C mitotic spindle
GO:0090161 P Golgi ribbon formation
GO:0090166 P Golgi disassembly
GO:0090306 P meiotic spindle assembly
GO:0090307 P mitotic spindle assembly
4190 O_BomoSK13772_complete:A_BomoSK_comp13358_c0_seq3
698bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000139 C Golgi membrane
GO:0000922 C spindle pole
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006486 P protein glycosylation
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007020 P microtubule nucleation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007092 P positive regulation of ubiquitin protein ligase activity
GO:0008017 F microtubule binding
GO:0008356 P asymmetric cell division
GO:0010507 P negative regulation of autophagy
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0019905 F syntaxin binding
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0032091 P negative regulation of protein binding
GO:0032580 C Golgi cisterna membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048208 P COPII vesicle coating
GO:0051225 P spindle assembly
GO:0051289 P protein homotetramerization
GO:0051297 P centrosome cycle
GO:0051301 P cell division
GO:0060050 P positive regulation of protein glycosylation
GO:0061676 F importin-alpha family protein binding
GO:0072686 C mitotic spindle
GO:0090161 P Golgi ribbon formation
GO:0090166 P Golgi disassembly
GO:0090306 P meiotic spindle assembly
GO:0090307 P mitotic spindle assembly
4191 O_BomoSK13773_complete:A_BomoSK_comp13360_c0_seq1
176bp
 PREDICTED:_vacuolar_protein-sorting-associated_protein_25-like_isoform_X2_[Amyelois_transitella]
GO:0000814 C ESCRT II complex
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006810 P transport
GO:0007293 P germarium-derived egg chamber formation
GO:0008105 P protein localization
GO:0008283 P cell population proliferation
GO:0008593 P regulation of Notch signaling pathway
GO:0010008 C endosome membrane
GO:0010669 P epithelial structure maintenance
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0019233 P sensory perception of pain
GO:0030154 P cell differentiation
GO:0030713 P ovarian follicle cell stalk formation
GO:0032509 P endosome transport via multivesicular body sorting pathway
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043328 P protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0045450 P bicoid mRNA localization
GO:0048803 P imaginal disc-derived male genitalia morphogenesis
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060429 P epithelium development
GO:0070086 P ubiquitin-dependent endocytosis
GO:0097352 P autophagosome maturation
4192 O_BomoSK13774_complete:A_BomoSK_comp13360_c0_seq2
405bp
 Vacuolar_protein-sorting-associated_protein_25_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035299 F inositol pentakisphosphate 2-kinase activity
GO:0043647 P inositol phosphate metabolic process
GO:0052746 P inositol phosphorylation
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
4193 O_BomoSK13775_complete:A_BomoSK_comp13360_c0_seq4
405bp
 Vacuolar_protein-sorting-associated_protein_25_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035299 F inositol pentakisphosphate 2-kinase activity
GO:0043647 P inositol phosphate metabolic process
GO:0052746 P inositol phosphorylation
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
4194 O_BomoSK13776_complete:A_BomoSK_comp13361_c1_seq1
230bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
4195 O_BomoSK13777_complete:A_BomoSK_comp13361_c1_seq2
111bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
4196 O_BomoSK13778_complete:A_BomoSK_comp13361_c1_seq3
500bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
4197 O_BomoSK13779_complete:A_BomoSK_comp13362_c0_seq1
122bp
4198 O_BomoSK1377_complete:A_BomoSK_comp4150_c0_seq1
562bp
 PREDICTED:_RNA_polymerase_I-specific_transcription_initiation_factor_RRN3_isoform_X1_[Amyelois_transitella]
GO:0001164 F RNA polymerase I core promoter sequence-specific DNA binding
GO:0001701 P in utero embryonic development
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0007000 P nucleolus organization
GO:0007028 P cytoplasm organization
GO:0008283 P cell population proliferation
GO:0010976 P positive regulation of neuron projection development
GO:0042254 P ribosome biogenesis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048872 P homeostasis of number of cells
GO:0070063 F RNA polymerase binding
GO:1902254 P negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator
GO:2000142 P regulation of DNA-templated transcription, initiation
4199 O_BomoSK13780_complete:A_BomoSK_comp13363_c0_seq1
419bp
 PREDICTED:_golgin-45_[Papilio_xuthus]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005796 C Golgi lumen
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019899 F enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0043001 P Golgi to plasma membrane protein transport
4200 O_BomoSK13781_internal:A_BomoSK_comp13365_c0_seq1
1051bp
 PREDICTED:_AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0016575 P histone deacetylation
GO:0017053 C transcription repressor complex
GO:0034773 P histone H4-K20 trimethylation
GO:0036124 P histone H3-K9 trimethylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048821 P erythrocyte development
GO:0080182 P histone H3-K4 trimethylation
GO:0097368 P establishment of Sertoli cell barrier
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