Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
4111	O_BomoSK13700_complete:A_BomoSK_comp13335_c0_seq1 668bp	Bomo_Chr1	bestrophin_2_[Spodoptera_littoralis]	GO:0005254 F chloride channel activity GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006821 P chloride transport GO:0015698 P inorganic anion transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0034707 C chloride channel complex GO:0043271 P negative regulation of ion transport GO:1902476 P chloride transmembrane transport
4112	O_BomoSK13701_complete:A_BomoSK_comp13336_c0_seq1 380bp	Bomo_Chr8	PREDICTED:_loquacious_isoform_X5_[Bombyx_mori]	GO:0003723 F RNA binding GO:0003725 F double-stranded RNA binding GO:0005515 F protein binding GO:0005622 C intracellular anatomical structure GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016020 C membrane GO:0019899 F enzyme binding GO:0030422 P production of siRNA involved in RNA interference GO:0031047 P gene silencing by RNA GO:0031054 P pre-miRNA processing GO:0034599 P cellular response to oxidative stress GO:0035196 P production of miRNAs involved in gene silencing by miRNA GO:0042473 P outer ear morphogenesis GO:0042474 P middle ear morphogenesis GO:0042802 F identical protein binding GO:0042803 F protein homodimerization activity GO:0044822 F RNA binding GO:0048471 C perinuclear region of cytoplasm GO:0048705 P skeletal system morphogenesis GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
4113	O_BomoSK13702_complete:A_BomoSK_comp13336_c0_seq3 380bp	Bomo_Chr8	PREDICTED:_loquacious_isoform_X5_[Bombyx_mori]	GO:0003723 F RNA binding GO:0003725 F double-stranded RNA binding GO:0005515 F protein binding GO:0005622 C intracellular anatomical structure GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016020 C membrane GO:0019899 F enzyme binding GO:0030422 P production of siRNA involved in RNA interference GO:0031047 P gene silencing by RNA GO:0031054 P pre-miRNA processing GO:0034599 P cellular response to oxidative stress GO:0035196 P production of miRNAs involved in gene silencing by miRNA GO:0042473 P outer ear morphogenesis GO:0042474 P middle ear morphogenesis GO:0042802 F identical protein binding GO:0042803 F protein homodimerization activity GO:0044822 F RNA binding GO:0048471 C perinuclear region of cytoplasm GO:0048705 P skeletal system morphogenesis GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
4114	O_BomoSK13703_complete:A_BomoSK_comp13337_c0_seq1 1337bp	Bomo_Chr1	PREDICTED:_kalirin_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005085 F guanyl-nucleotide exchange factor activity GO:0005089 F guanyl-nucleotide exchange factor activity GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005856 C cytoskeleton GO:0006468 P protein phosphorylation GO:0007165 P signal transduction GO:0007399 P nervous system development GO:0015629 C actin cytoskeleton GO:0016192 P vesicle-mediated transport GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0035023 P regulation of Rho protein signal transduction GO:0035556 P intracellular signal transduction GO:0043065 P positive regulation of apoptotic process GO:0043547 P positive regulation of GTPase activity GO:0046872 F metal ion binding GO:0048013 P ephrin receptor signaling pathway GO:0051056 P regulation of small GTPase mediated signal transduction GO:0070062 C extracellular exosome
4115	O_BomoSK13704_complete:A_BomoSK_comp13337_c0_seq1 215bp	Bomo_Chr1	DNA_polymerase_III_subunit_epsilon_[Geovibrio_sp._L21-Ace-BES]
4116	O_BomoSK13705_complete:A_BomoSK_comp13337_c0_seq1 173bp	Bomo_Chr1	PREDICTED:_kelch-like_protein_5,_partial_[Thamnophis_sirtalis]
4117	O_BomoSK13706_complete:A_BomoSK_comp13337_c0_seq1 146bp	Bomo_Chr1	phosphodiesterase_[Amycolatopsis_thermoflava]
4118	O_BomoSK13707_complete:A_BomoSK_comp13337_c0_seq1 133bp	Bomo_Chr1
4119	O_BomoSK13708_complete:A_BomoSK_comp13337_c0_seq2 1257bp	Bomo_Chr1	PREDICTED:_kalirin_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005085 F guanyl-nucleotide exchange factor activity GO:0005089 F guanyl-nucleotide exchange factor activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0035023 P regulation of Rho protein signal transduction GO:0043547 P positive regulation of GTPase activity
4120	O_BomoSK13709_complete:A_BomoSK_comp13337_c0_seq2 215bp	Bomo_Chr1	DNA_polymerase_III_subunit_epsilon_[Geovibrio_sp._L21-Ace-BES]
4121	O_BomoSK1370_complete:A_BomoSK_comp4141_c0_seq1 602bp	Bomo_Chr25	DNApol-iota_[Operophtera_brumata]	GO:0003677 F DNA binding GO:0003684 F damaged DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0043231 C intracellular membrane-bounded organelle GO:0046872 F metal ion binding GO:0071494 P cellular response to UV-C GO:0071897 P DNA biosynthetic process
4122	O_BomoSK13710_complete:A_BomoSK_comp13337_c0_seq2 173bp	Bomo_Chr1	PREDICTED:_kelch-like_protein_5,_partial_[Thamnophis_sirtalis]
4123	O_BomoSK13711_complete:A_BomoSK_comp13337_c0_seq2 146bp	Bomo_Chr1	phosphodiesterase_[Amycolatopsis_thermoflava]
4124	O_BomoSK13712_complete:A_BomoSK_comp13337_c0_seq2 133bp	Bomo_Chr1
4125	O_BomoSK13713_3prime_partial:A_BomoSK_comp13337_c2_seq1 1513bp	Bomo_Chr1	PREDICTED:_kalirin_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005085 F guanyl-nucleotide exchange factor activity GO:0005089 F guanyl-nucleotide exchange factor activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0019899 F enzyme binding GO:0035023 P regulation of Rho protein signal transduction GO:0043547 P positive regulation of GTPase activity
4126	O_BomoSK13714_complete:A_BomoSK_comp13337_c2_seq1 128bp	Bomo_Chr1	PREDICTED:_echinoderm_microtubule-associated_protein-like_5_isoform_X2_[Xenopus_tropicalis]
4127	O_BomoSK13715_complete:A_BomoSK_comp13337_c2_seq1 116bp	Bomo_Chr1	cytochrome_P450_monooxygenase,_putative_[Talaromyces_stipitatus_ATCC_10500]
4128	O_BomoSK13716_complete:A_BomoSK_comp13338_c0_seq1 283bp	Bomo_Chr9	BRISC_and_BRCA1-A_complex_member_1_[Operophtera_brumata]	GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006974 P cellular response to DNA damage stimulus GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0010212 P response to ionizing radiation GO:0016568 P chromatin organization GO:0031572 P mitotic G2 DNA damage checkpoint signaling GO:0045739 P positive regulation of DNA repair GO:0051301 P cell division GO:0070531 C BRCA1-A complex GO:0070536 P protein K63-linked deubiquitination GO:0070552 C BRISC complex
4129	O_BomoSK13717_3prime_partial:A_BomoSK_comp13339_c1_seq1 256bp	Bomo_Chr7	PREDICTED:_E3_ubiquitin-protein_ligase_KCMF1_[Bombyx_mori]	GO:0008152 P metabolic process GO:0008270 F zinc ion binding GO:0016874 F ligase activity GO:0046872 F metal ion binding
4130	O_BomoSK13718_complete:A_BomoSK_comp13339_c1_seq1 177bp	Bomo_Chr7	PREDICTED:_general_transcription_factor_II-I_repeat_domain-containing_protein_2B_isoform_X3_[Peromyscus_maniculatus_bairdii]
4131	O_BomoSK13719_complete:A_BomoSK_comp13339_c1_seq2 103bp	Bomo_Chr7	hypothetical_protein_SPBR_07341_[Sporothrix_brasiliensis_5110]
4132	O_BomoSK1371_complete:A_BomoSK_comp4141_c0_seq2 607bp	Bomo_Chr25	DNApol-iota_[Operophtera_brumata]	GO:0003677 F DNA binding GO:0003684 F damaged DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0043231 C intracellular membrane-bounded organelle GO:0046872 F metal ion binding GO:0071494 P cellular response to UV-C GO:0071897 P DNA biosynthetic process
4133	O_BomoSK13720_3prime_partial:A_BomoSK_comp13339_c1_seq3 254bp	Bomo_Chr7	PREDICTED:_E3_ubiquitin-protein_ligase_KCMF1_[Bombyx_mori]	GO:0008152 P metabolic process GO:0008270 F zinc ion binding GO:0016874 F ligase activity GO:0046872 F metal ion binding
4134	O_BomoSK13721_5prime_partial:A_BomoSK_comp13339_c1_seq3 191bp	Bomo_Chr7	PREDICTED:_general_transcription_factor_II-I_repeat_domain-containing_protein_2B_isoform_X3_[Peromyscus_maniculatus_bairdii]
4135	O_BomoSK13722_5prime_partial:A_BomoSK_comp13339_c1_seq4 117bp	Bomo_Chr7	hypothetical_protein_SPBR_07341_[Sporothrix_brasiliensis_5110]
4136	O_BomoSK13723_complete:A_BomoSK_comp13340_c0_seq1 324bp	Bomo_Chr8	PREDICTED:_lysosomal-associated_transmembrane_protein_isoform_X1_[Bombyx_mori]	GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0012505 C endomembrane system GO:0016020 C membrane GO:0016021 C integral component of membrane
4137	O_BomoSK13724_complete:A_BomoSK_comp13340_c0_seq2 314bp	Bomo_Chr8	lysosomal-associated_transmembrane_protein_[Bombyx_mori]	GO:0006810 P transport GO:0012505 C endomembrane system GO:0016020 C membrane GO:0016021 C integral component of membrane
4138	O_BomoSK13725_complete:A_BomoSK_comp13341_c0_seq1 1296bp	Bomo_Chr1	PREDICTED:_collagen_alpha-1(I)_chain-like_[Bombyx_mori]
4139	O_BomoSK13726_5prime_partial:A_BomoSK_comp13341_c0_seq1 253bp	Bomo_Chr1	PREDICTED:_collagen_alpha-1(I)_chain-like_[Bombyx_mori]
4140	O_BomoSK13727_complete:A_BomoSK_comp13341_c0_seq1 182bp	Bomo_Chr1	predicted_protein_[Sclerotinia_sclerotiorum_1980]