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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3811 O_BomoSK13430_complete:A_BomoSK_comp13273_c0_seq2
191bp
3812 O_BomoSK13431_complete:A_BomoSK_comp13273_c0_seq2
108bp
 hypothetical_protein_BA92_09215_[Sanguibacteroides_justesenii]
3813 O_BomoSK13432_complete:A_BomoSK_comp13273_c0_seq3
191bp
 PREDICTED:_UPF0430_protein_CG31712-like_isoform_X2_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3814 O_BomoSK13433_complete:A_BomoSK_comp13273_c0_seq3
119bp
3815 O_BomoSK13434_complete:A_BomoSK_comp13273_c0_seq3
108bp
 hypothetical_protein_BA92_09215_[Sanguibacteroides_justesenii]
3816 O_BomoSK13435_5prime_partial:A_BomoSK_comp13275_c0_seq1
260bp
 PREDICTED:_sex_determination_protein_fruitless-like_isoform_X1_[Bombyx_mori]
3817 O_BomoSK13436_5prime_partial:A_BomoSK_comp13275_c0_seq2
241bp
 PREDICTED:_sex_determination_protein_fruitless-like_isoform_X3_[Bombyx_mori]
3818 O_BomoSK13437_complete:A_BomoSK_comp13276_c0_seq1
1068bp
 PREDICTED:_RNA_exonuclease_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3819 O_BomoSK13438_5prime_partial:A_BomoSK_comp13277_c1_seq1
341bp
 PREDICTED:_melanotransferrin_[Papilio_xuthus]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
GO:0055072 P iron ion homeostasis
3820 O_BomoSK13439_complete:A_BomoSK_comp13279_c0_seq1
157bp
 PREDICTED:_transmembrane_protein_70_homolog,_mitochondrial_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0032592 C integral component of mitochondrial membrane
GO:0033615 P mitochondrial proton-transporting ATP synthase complex assembly
3821 O_BomoSK1343_5prime_partial:A_BomoSK_comp4116_c0_seq1
505bp
 PREDICTED:_T-cell_activation_inhibitor,_mitochondrial_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0008150 P biological_process
3822 O_BomoSK13440_complete:A_BomoSK_comp13279_c0_seq2
214bp
 PREDICTED:_transmembrane_protein_70_homolog,_mitochondrial_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0032592 C integral component of mitochondrial membrane
GO:0033615 P mitochondrial proton-transporting ATP synthase complex assembly
3823 O_BomoSK13441_internal:A_BomoSK_comp13282_c0_seq1
711bp
 PREDICTED:_THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
3824 O_BomoSK13442_complete:A_BomoSK_comp13282_c0_seq1
116bp
 hypothetical_protein_AB675_4301_[Phialophora_attae]
3825 O_BomoSK13443_3prime_partial:A_BomoSK_comp13282_c1_seq1
240bp
 PREDICTED:_THO_complex_subunit_2_isoform_X2_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
3826 O_BomoSK13444_complete:A_BomoSK_comp13283_c1_seq1
160bp
 DNA_cytosine-5_methyltransferase_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
3827 O_BomoSK13445_complete:A_BomoSK_comp13283_c1_seq1
157bp
 PREDICTED:_protein_JTB-like_[Plutella_xylostella]
GO:0000910 P cytokinesis
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008637 P apoptotic mitochondrial changes
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0042127 P regulation of cell population proliferation
GO:0045860 P positive regulation of protein kinase activity
GO:0051301 P cell division
3828 O_BomoSK13446_5prime_partial:A_BomoSK_comp13283_c1_seq2
301bp
 DNA_cytosine-5_methyltransferase_[Bombyx_mori]
GO:0001975 P response to amphetamine
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
3829 O_BomoSK13447_complete:A_BomoSK_comp13283_c1_seq2
157bp
 PREDICTED:_protein_JTB-like_[Plutella_xylostella]
GO:0000910 P cytokinesis
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008637 P apoptotic mitochondrial changes
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0042127 P regulation of cell population proliferation
GO:0045860 P positive regulation of protein kinase activity
GO:0051301 P cell division
3830 O_BomoSK13448_complete:A_BomoSK_comp13284_c1_seq1
196bp
 PREDICTED:_sarcoplasmic_calcium-binding_protein_1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
3831 O_BomoSK13449_complete:A_BomoSK_comp13284_c1_seq2
196bp
 PREDICTED:_sarcoplasmic_calcium-binding_protein_1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
3832 O_BomoSK1344_internal:A_BomoSK_comp4117_c0_seq1
404bp
 PREDICTED:_non-lysosomal_glucosylceramidase-like_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004348 F glucosylceramidase activity
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008206 P bile acid metabolic process
GO:0008422 F beta-glucosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
3833 O_BomoSK13450_3prime_partial:A_BomoSK_comp13285_c0_seq1
1306bp
 xanthine_dehydrogenase_1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004854 F xanthine dehydrogenase activity
GO:0004855 F xanthine oxidase activity
GO:0005506 F iron ion binding
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006144 P purine nucleobase metabolic process
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006525 P arginine metabolic process
GO:0006568 P tryptophan metabolic process
GO:0006650 P glycerophospholipid metabolic process
GO:0008340 P determination of adult lifespan
GO:0009055 F electron transfer activity
GO:0009115 P xanthine catabolic process
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0016903 F oxidoreductase activity, acting on the aldehyde or oxo group of donors
GO:0043546 F molybdopterin cofactor binding
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
GO:0048072 P compound eye pigmentation
GO:0050660 F flavin adenine dinucleotide binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
3834 O_BomoSK13451_complete:A_BomoSK_comp13285_c0_seq2
1357bp
 xanthine_dehydrogenase_1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004854 F xanthine dehydrogenase activity
GO:0004855 F xanthine oxidase activity
GO:0005506 F iron ion binding
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006144 P purine nucleobase metabolic process
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006525 P arginine metabolic process
GO:0006568 P tryptophan metabolic process
GO:0006650 P glycerophospholipid metabolic process
GO:0008340 P determination of adult lifespan
GO:0009055 F electron transfer activity
GO:0009115 P xanthine catabolic process
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0016903 F oxidoreductase activity, acting on the aldehyde or oxo group of donors
GO:0043546 F molybdopterin cofactor binding
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
GO:0048072 P compound eye pigmentation
GO:0050660 F flavin adenine dinucleotide binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
3835 O_BomoSK13452_internal:A_BomoSK_comp13286_c0_seq1
195bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
3836 O_BomoSK13453_complete:A_BomoSK_comp13287_c0_seq1
183bp
 PREDICTED:_NEDD4_family-interacting_protein_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002761 P regulation of myeloid leukocyte differentiation
GO:0002829 P negative regulation of type 2 immune response
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005938 C cell cortex
GO:0006879 P cellular iron ion homeostasis
GO:0007034 P vacuolar transport
GO:0007165 P signal transduction
GO:0010008 C endosome membrane
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0031398 P positive regulation of protein ubiquitination
GO:0032410 P negative regulation of transporter activity
GO:0032713 P negative regulation of interleukin-4 production
GO:0042130 P negative regulation of T cell proliferation
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045619 P regulation of lymphocyte differentiation
GO:0045732 P positive regulation of protein catabolic process
GO:0048294 P negative regulation of isotype switching to IgE isotypes
GO:0048302 P regulation of isotype switching to IgG isotypes
GO:0048471 C perinuclear region of cytoplasm
GO:0050728 P negative regulation of inflammatory response
GO:0051224 P negative regulation of protein transport
3837 O_BomoSK13454_complete:A_BomoSK_comp13287_c0_seq2
222bp
 PREDICTED:_NEDD4_family-interacting_protein_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002761 P regulation of myeloid leukocyte differentiation
GO:0002829 P negative regulation of type 2 immune response
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005938 C cell cortex
GO:0006879 P cellular iron ion homeostasis
GO:0007034 P vacuolar transport
GO:0007165 P signal transduction
GO:0010008 C endosome membrane
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0031398 P positive regulation of protein ubiquitination
GO:0032410 P negative regulation of transporter activity
GO:0032713 P negative regulation of interleukin-4 production
GO:0042130 P negative regulation of T cell proliferation
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045619 P regulation of lymphocyte differentiation
GO:0045732 P positive regulation of protein catabolic process
GO:0048294 P negative regulation of isotype switching to IgE isotypes
GO:0048302 P regulation of isotype switching to IgG isotypes
GO:0048471 C perinuclear region of cytoplasm
GO:0050728 P negative regulation of inflammatory response
GO:0051224 P negative regulation of protein transport
3838 O_BomoSK13455_3prime_partial:A_BomoSK_comp13288_c0_seq1
487bp
 PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0071004 C U2-type prespliceosome
3839 O_BomoSK13456_complete:A_BomoSK_comp13288_c0_seq1
102bp
3840 O_BomoSK13457_5prime_partial:A_BomoSK_comp13288_c1_seq1
307bp
 PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0071004 C U2-type prespliceosome
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