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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3751 O_BomoSK13377_complete:A_BomoSK_comp13263_c0_seq1
280bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_8_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0009987 P cellular process
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
3752 O_BomoSK13378_complete:A_BomoSK_comp13264_c0_seq1
923bp
 PREDICTED:_protein_grainyhead_isoform_X1_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007009 P plasma membrane organization
GO:0007399 P nervous system development
GO:0007402 P ganglion mother cell fate determination
GO:0007419 P ventral cord development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007464 P R3/R4 cell fate commitment
GO:0008360 P regulation of cell shape
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042052 P rhabdomere development
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0061024 P membrane organization
GO:0061041 P regulation of wound healing
3753 O_BomoSK13379_complete:A_BomoSK_comp13264_c0_seq1
102bp
 50S_ribosome-binding_GTPase_[Tetrahymena_thermophila_SB210]
3754 O_BomoSK1337_complete:A_BomoSK_comp4109_c0_seq1
1178bp
 PREDICTED:_biorientation_of_chromosomes_in_cell_division_protein_1-like_1_isoform_X2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0051301 P cell division
3755 O_BomoSK13380_complete:A_BomoSK_comp13264_c0_seq2
636bp
 PREDICTED:_protein_grainyhead_isoform_X6_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007009 P plasma membrane organization
GO:0007399 P nervous system development
GO:0007402 P ganglion mother cell fate determination
GO:0007419 P ventral cord development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007464 P R3/R4 cell fate commitment
GO:0008360 P regulation of cell shape
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042052 P rhabdomere development
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0061024 P membrane organization
GO:0061041 P regulation of wound healing
3756 O_BomoSK13381_complete:A_BomoSK_comp13264_c0_seq2
102bp
 50S_ribosome-binding_GTPase_[Tetrahymena_thermophila_SB210]
3757 O_BomoSK13382_complete:A_BomoSK_comp13264_c0_seq3
785bp
 PREDICTED:_protein_grainyhead_isoform_X4_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007009 P plasma membrane organization
GO:0007399 P nervous system development
GO:0007402 P ganglion mother cell fate determination
GO:0007419 P ventral cord development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007464 P R3/R4 cell fate commitment
GO:0008360 P regulation of cell shape
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042052 P rhabdomere development
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0061024 P membrane organization
GO:0061041 P regulation of wound healing
3758 O_BomoSK13383_complete:A_BomoSK_comp13264_c0_seq3
112bp
 MULTISPECIES:_aminopeptidase_P_[Sphingobium]
3759 O_BomoSK13384_complete:A_BomoSK_comp13264_c0_seq3
102bp
 50S_ribosome-binding_GTPase_[Tetrahymena_thermophila_SB210]
3760 O_BomoSK13385_internal:A_BomoSK_comp13265_c0_seq1
331bp
 PREDICTED:_protein_C-ets-1_isoform_X2_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006909 P phagocytosis
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007265 P Ras protein signal transduction
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007429 P secondary branching, open tracheal system
GO:0007455 P eye-antennal disc morphogenesis
GO:0007464 P R3/R4 cell fate commitment
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007507 P heart development
GO:0008284 P positive regulation of cell population proliferation
GO:0008293 P torso signaling pathway
GO:0008340 P determination of adult lifespan
GO:0009997 P negative regulation of cardioblast cell fate specification
GO:0030707 P ovarian follicle cell development
GO:0035225 P determination of genital disc primordium
GO:0043565 F sequence-specific DNA binding
GO:0045467 P R7 cell development
GO:0045610 P regulation of hemocyte differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048747 P muscle cell development
GO:0050767 P regulation of neurogenesis
GO:0060438 P trachea development
GO:0060439 P trachea morphogenesis
GO:0061320 P pericardial nephrocyte differentiation
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:2001234 P negative regulation of apoptotic signaling pathway
3761 O_BomoSK13386_complete:A_BomoSK_comp13265_c0_seq1
137bp
 uroporphyrinogen_decarboxylase_[Lysinimicrobium_mangrovi]
3762 O_BomoSK13387_5prime_partial:A_BomoSK_comp13265_c0_seq2
162bp
 PREDICTED:_protein_C-ets-1_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010595 P positive regulation of endothelial cell migration
GO:0043565 F sequence-specific DNA binding
GO:0045765 P regulation of angiogenesis
3763 O_BomoSK13388_5prime_partial:A_BomoSK_comp13265_c0_seq2
102bp
 PREDICTED:_protein_C-ets-2-like_isoform_X2_[Elephantulus_edwardii]
3764 O_BomoSK13389_3prime_partial:A_BomoSK_comp13265_c0_seq3
260bp
 PREDICTED:_ETS-like_protein_pointed,_isoform_P2/D_isoform_X3_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006909 P phagocytosis
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007265 P Ras protein signal transduction
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007429 P secondary branching, open tracheal system
GO:0007455 P eye-antennal disc morphogenesis
GO:0007464 P R3/R4 cell fate commitment
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007507 P heart development
GO:0008284 P positive regulation of cell population proliferation
GO:0008293 P torso signaling pathway
GO:0008340 P determination of adult lifespan
GO:0009997 P negative regulation of cardioblast cell fate specification
GO:0030707 P ovarian follicle cell development
GO:0035225 P determination of genital disc primordium
GO:0043565 F sequence-specific DNA binding
GO:0045467 P R7 cell development
GO:0045610 P regulation of hemocyte differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048747 P muscle cell development
GO:0050767 P regulation of neurogenesis
GO:0060438 P trachea development
GO:0060439 P trachea morphogenesis
GO:0061320 P pericardial nephrocyte differentiation
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:2001234 P negative regulation of apoptotic signaling pathway
3765 O_BomoSK1338_complete:A_BomoSK_comp4109_c0_seq1
121bp
3766 O_BomoSK13390_internal:A_BomoSK_comp13267_c0_seq1
402bp
 Nogo-B_receptor_[Trachymyrmex_septentrionalis]
3767 O_BomoSK13391_internal:A_BomoSK_comp13267_c0_seq1
402bp
 PREDICTED:_brahma-associated_protein_of_60_kDa_[Amyelois_transitella]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0010628 P positive regulation of gene expression
GO:0017022 F myosin binding
GO:0031453 P positive regulation of heterochromatin assembly
GO:0035060 C brahma complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070604 C RSC-type complex
3768 O_BomoSK13392_internal:A_BomoSK_comp13267_c0_seq2
407bp
 Nogo-B_receptor_[Trachymyrmex_septentrionalis]
3769 O_BomoSK13393_internal:A_BomoSK_comp13267_c0_seq2
407bp
 PREDICTED:_brahma-associated_protein_of_60_kDa_[Amyelois_transitella]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0010628 P positive regulation of gene expression
GO:0017022 F myosin binding
GO:0031453 P positive regulation of heterochromatin assembly
GO:0035060 C brahma complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070604 C RSC-type complex
3770 O_BomoSK13394_3prime_partial:A_BomoSK_comp13268_c0_seq1
523bp
 PREDICTED:_dystonin-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005925 C focal adhesion
GO:0008092 F cytoskeletal protein binding
GO:0008307 F structural constituent of muscle
GO:0016528 C sarcoplasm
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0030506 F ankyrin binding
GO:0031581 P hemidesmosome assembly
GO:0042383 C sarcolemma
GO:0043034 C costamere
GO:0043292 C contractile fiber
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0070062 C extracellular exosome
3771 O_BomoSK13395_5prime_partial:A_BomoSK_comp13268_c0_seq1
218bp
3772 O_BomoSK13396_3prime_partial:A_BomoSK_comp13268_c0_seq1
203bp
3773 O_BomoSK13397_5prime_partial:A_BomoSK_comp13268_c0_seq1
156bp
 hypothetical_protein_[Aminiphilus_circumscriptus]
3774 O_BomoSK13398_complete:A_BomoSK_comp13268_c0_seq1
143bp
 Transcription_elongation_factor_A_protein_2_[Auxenochlorella_protothecoides]
3775 O_BomoSK13399_3prime_partial:A_BomoSK_comp13268_c0_seq2
405bp
 PREDICTED:_dystonin-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005925 C focal adhesion
GO:0008092 F cytoskeletal protein binding
GO:0008307 F structural constituent of muscle
GO:0016528 C sarcoplasm
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0030506 F ankyrin binding
GO:0031581 P hemidesmosome assembly
GO:0042383 C sarcolemma
GO:0043034 C costamere
GO:0043292 C contractile fiber
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0070062 C extracellular exosome
3776 O_BomoSK1339_complete:A_BomoSK_comp4109_c0_seq1
112bp
3777 O_BomoSK133_internal:A_BomoSK_comp420_c0_seq1
266bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC2_[Papilio_xuthus]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
3778 O_BomoSK13400_5prime_partial:A_BomoSK_comp13268_c0_seq2
218bp
3779 O_BomoSK13401_3prime_partial:A_BomoSK_comp13268_c0_seq2
203bp
3780 O_BomoSK13402_5prime_partial:A_BomoSK_comp13268_c0_seq2
156bp
 hypothetical_protein_[Aminiphilus_circumscriptus]
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