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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3721 O_BomoSK1334_3prime_partial:A_BomoSK_comp4103_c0_seq2
173bp
 PREDICTED:_methionyl-tRNA_formyltransferase,_mitochondrial_[Papilio_polytes]
GO:0003824 F catalytic activity
GO:0004479 F methionyl-tRNA formyltransferase activity
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0071951 P conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
3722 O_BomoSK13350_complete:A_BomoSK_comp13252_c1_seq5
1144bp
 PREDICTED:_golgin_subfamily_A_member_6-like_protein_22_isoform_X2_[Bombyx_mori]
3723 O_BomoSK13351_complete:A_BomoSK_comp13252_c1_seq5
157bp
3724 O_BomoSK13352_complete:A_BomoSK_comp13252_c1_seq5
130bp
3725 O_BomoSK13353_internal:A_BomoSK_comp13253_c0_seq1
746bp
 PREDICTED:_trifunctional_purine_biosynthetic_protein_adenosine-3_isoform_X1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
3726 O_BomoSK13354_complete:A_BomoSK_comp13253_c0_seq1
342bp
 Uncharacterised_protein_[Bordetella_pertussis]
3727 O_BomoSK13355_complete:A_BomoSK_comp13253_c0_seq1
212bp
 Uncharacterised_protein_[Bordetella_pertussis]
3728 O_BomoSK13356_5prime_partial:A_BomoSK_comp13253_c0_seq1
184bp
 Uncharacterised_protein_[Bordetella_pertussis]
3729 O_BomoSK13357_3prime_partial:A_BomoSK_comp13253_c0_seq2
274bp
 PREDICTED:_trifunctional_purine_biosynthetic_protein_adenosine-3_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
3730 O_BomoSK13358_5prime_partial:A_BomoSK_comp13253_c0_seq2
184bp
 Uncharacterised_protein_[Bordetella_pertussis]
3731 O_BomoSK13359_complete:A_BomoSK_comp13253_c0_seq2
181bp
 hypothetical_protein_M878_42670_[Streptomyces_roseochromogenus_subsp._oscitans_DS_12.976]
3732 O_BomoSK1335_5prime_partial:A_BomoSK_comp4108_c1_seq1
144bp
 PREDICTED:_solute_carrier_family_2,_facilitated_glucose_transporter_member_1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005355 F glucose transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006461 P protein-containing complex assembly
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015758 P glucose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0030864 C cortical actin cytoskeleton
GO:0032868 P response to insulin
GO:0043621 F protein self-association
GO:0055085 P transmembrane transport
GO:0071548 P response to dexamethasone
GO:1904659 P glucose transmembrane transport
3733 O_BomoSK13360_complete:A_BomoSK_comp13255_c1_seq1
332bp
 PREDICTED:_sulfatase-modifying_factor_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006687 P glycosphingolipid metabolic process
GO:0016491 F oxidoreductase activity
GO:0042803 F protein homodimerization activity
GO:0043687 P post-translational protein modification
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
3734 O_BomoSK13361_3prime_partial:A_BomoSK_comp13256_c0_seq1
720bp
 PREDICTED:_nuclear_receptor_corepressor_1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
3735 O_BomoSK13362_5prime_partial:A_BomoSK_comp13256_c0_seq1
164bp
3736 O_BomoSK13363_complete:A_BomoSK_comp13256_c0_seq1
157bp
 adenylyl_cyclase_[Methylobacterium_platani]
3737 O_BomoSK13364_complete:A_BomoSK_comp13256_c0_seq1
143bp
3738 O_BomoSK13365_3prime_partial:A_BomoSK_comp13256_c0_seq2
724bp
 PREDICTED:_nuclear_receptor_corepressor_1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
3739 O_BomoSK13366_5prime_partial:A_BomoSK_comp13256_c0_seq2
164bp
3740 O_BomoSK13367_complete:A_BomoSK_comp13256_c0_seq2
157bp
 adenylyl_cyclase_[Methylobacterium_platani]
3741 O_BomoSK13368_5prime_partial:A_BomoSK_comp13257_c1_seq1
634bp
 PREDICTED:_cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
3742 O_BomoSK13369_complete:A_BomoSK_comp13257_c1_seq1
131bp
 hypothetical_protein_N302_12527,_partial_[Corvus_brachyrhynchos]
3743 O_BomoSK1336_5prime_partial:A_BomoSK_comp4108_c1_seq1
140bp
 PREDICTED:_interleukin-1_receptor_type_2-like_[Oreochromis_niloticus]
3744 O_BomoSK13370_3prime_partial:A_BomoSK_comp13258_c0_seq1
204bp
 PREDICTED:_uncharacterized_protein_LOC101739264_[Bombyx_mori]
3745 O_BomoSK13371_complete:A_BomoSK_comp13258_c0_seq2
515bp
 PREDICTED:_putative_zinc_finger_protein_724_isoform_X5_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3746 O_BomoSK13372_complete:A_BomoSK_comp13258_c0_seq3
599bp
 PREDICTED:_putative_zinc_finger_protein_724_isoform_X5_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3747 O_BomoSK13373_3prime_partial:A_BomoSK_comp13258_c0_seq4
120bp
 hypothetical_protein_KGM_19952_[Danaus_plexippus]
3748 O_BomoSK13374_5prime_partial:A_BomoSK_comp13259_c0_seq2
103bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
3749 O_BomoSK13375_5prime_partial:A_BomoSK_comp13259_c0_seq3
103bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
3750 O_BomoSK13376_complete:A_BomoSK_comp13261_c0_seq1
266bp
 erythrocyte_carbonic_anhydrase_[Bombyx_mori]
GO:0004089 F carbonate dehydratase activity
GO:0005737 C cytoplasm
GO:0006730 P one-carbon metabolic process
GO:0008270 F zinc ion binding
GO:0016829 F lyase activity
GO:0046872 F metal ion binding
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