SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2701 O_BomoSK12431_complete:A_BomoSK_comp12959_c1_seq1
136bp
 Protein_arg-6_[Hirsutella_minnesotensis_3608]
2702 O_BomoSK12432_5prime_partial:A_BomoSK_comp12960_c0_seq1
122bp
 LysR_family_transcriptional_regulator_[Bradyrhizobium_sp._Cp5.3]
2703 O_BomoSK12433_5prime_partial:A_BomoSK_comp12960_c0_seq1
120bp
2704 O_BomoSK12434_5prime_partial:A_BomoSK_comp12960_c0_seq1
113bp
 PREDICTED:_hnRNPA/B-like_28_isoform_X3_[Bombyx_mori]
2705 O_BomoSK12435_3prime_partial:A_BomoSK_comp12960_c0_seq1
110bp
2706 O_BomoSK12436_5prime_partial:A_BomoSK_comp12960_c0_seq2
122bp
 LysR_family_transcriptional_regulator_[Bradyrhizobium_sp._Cp5.3]
2707 O_BomoSK12437_5prime_partial:A_BomoSK_comp12960_c0_seq3
122bp
 LysR_family_transcriptional_regulator_[Bradyrhizobium_sp._Cp5.3]
2708 O_BomoSK12438_complete:A_BomoSK_comp12961_c0_seq1
609bp
 PREDICTED:_SUMO-activating_enzyme_subunit_2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0019948 F SUMO activating enzyme activity
GO:0031510 C SUMO activating enzyme complex
GO:0046872 F metal ion binding
2709 O_BomoSK12439_complete:A_BomoSK_comp12961_c0_seq1
108bp
 membrane_protein_[Photorhabdus_luminescens_subsp._luminescens]
2710 O_BomoSK1243_complete:A_BomoSK_comp4026_c0_seq1
100bp
 envelope_glycoprotein,_partial_[Human_immunodeficiency_virus_1]
2711 O_BomoSK12440_complete:A_BomoSK_comp12961_c0_seq1
103bp
 hypothetical_protein_O9G_003553_[Rozella_allomycis_CSF55]
2712 O_BomoSK12441_complete:A_BomoSK_comp12964_c0_seq1
104bp
 PREDICTED:_uncharacterized_protein_LOC105842174_isoform_X2_[Bombyx_mori]
2713 O_BomoSK12442_5prime_partial:A_BomoSK_comp12964_c0_seq2
136bp
 PREDICTED:_uncharacterized_protein_LOC105842174_isoform_X1_[Bombyx_mori]
2714 O_BomoSK12443_5prime_partial:A_BomoSK_comp12965_c0_seq1
493bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
2715 O_BomoSK12444_complete:A_BomoSK_comp12965_c0_seq1
201bp
 Nuclear_envelope_morphology_protein_1_[Ceratocystis_platani]
2716 O_BomoSK12445_complete:A_BomoSK_comp12965_c0_seq1
171bp
 DUF1604_domain_protein_[Ustilaginoidea_virens]
2717 O_BomoSK12446_5prime_partial:A_BomoSK_comp12965_c0_seq1
103bp
2718 O_BomoSK12447_complete:A_BomoSK_comp12966_c0_seq1
221bp
 coatomer_protein_complex_subunit_alpha_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005179 F hormone activity
GO:0005198 F structural molecule activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030133 C transport vesicle
GO:0030157 P pancreatic juice secretion
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0070062 C extracellular exosome
2719 O_BomoSK12448_3prime_partial:A_BomoSK_comp12966_c0_seq2
930bp
 coatomer_protein_complex_subunit_alpha_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005179 F hormone activity
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
2720 O_BomoSK12449_5prime_partial:A_BomoSK_comp12966_c0_seq2
315bp
 MoxR_protein_[Citreicella_sp._SE45]
2721 O_BomoSK1244_complete:A_BomoSK_comp4027_c0_seq1
399bp
 PREDICTED:_autophagy-related_protein_16-1-like_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0034045 C phagophore assembly site membrane
GO:0039689 P negative stranded viral RNA replication
GO:0042802 F identical protein binding
2722 O_BomoSK12450_5prime_partial:A_BomoSK_comp12966_c0_seq2
225bp
2723 O_BomoSK12451_3prime_partial:A_BomoSK_comp12966_c0_seq3
925bp
 coatomer_protein_complex_subunit_alpha_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005179 F hormone activity
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
2724 O_BomoSK12452_5prime_partial:A_BomoSK_comp12966_c0_seq3
315bp
 MoxR_protein_[Citreicella_sp._SE45]
2725 O_BomoSK12453_5prime_partial:A_BomoSK_comp12966_c0_seq3
225bp
2726 O_BomoSK12454_complete:A_BomoSK_comp12967_c0_seq1
249bp
 PREDICTED:_homeobox_protein_six1a-like_[Amyelois_transitella]
GO:0001744 P insect visual primordium formation
GO:0001745 P compound eye morphogenesis
GO:0001746 P Bolwig's organ morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007455 P eye-antennal disc morphogenesis
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0008347 P glial cell migration
GO:0009649 P entrainment of circadian clock
GO:0035271 P ring gland development
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
2727 O_BomoSK12455_3prime_partial:A_BomoSK_comp12968_c0_seq1
770bp
 PREDICTED:_talin-1_isoform_X7_[Papilio_xuthus]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0051015 F actin filament binding
2728 O_BomoSK12456_5prime_partial:A_BomoSK_comp12968_c0_seq1
256bp
 hypothetical_protein_SE92_07765_[Bradyrhizobium_sp._AT1]
2729 O_BomoSK12457_3prime_partial:A_BomoSK_comp12968_c0_seq1
218bp
2730 O_BomoSK12458_complete:A_BomoSK_comp12968_c0_seq2
1076bp
 Talin-1_[Papilio_machaon]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
previous next from show/33939

- SilkBase 1999-2023 -