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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1891 O_BomoSK11702_complete:A_BomoSK_comp12706_c1_seq3
227bp
 PREDICTED:_deoxynucleoside_kinase-like_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0004797 F thymidine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006165 P nucleoside diphosphate phosphorylation
GO:0006230 P TMP biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019136 F deoxynucleoside kinase activity
GO:0019206 F nucleoside kinase activity
GO:0046939 P nucleotide phosphorylation
GO:0071897 P DNA biosynthetic process
1892 O_BomoSK11703_complete:A_BomoSK_comp12706_c1_seq3
137bp
 hypothetical_protein_FF38_07250_[Lucilia_cuprina]
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0042802 F identical protein binding
1893 O_BomoSK11704_complete:A_BomoSK_comp12706_c1_seq4
301bp
 hypothetical_protein_RR46_04746_[Papilio_xuthus]
1894 O_BomoSK11705_complete:A_BomoSK_comp12706_c1_seq4
271bp
 PREDICTED:_putative_nuclease_HARBI1_[Solenopsis_invicta]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1895 O_BomoSK11706_complete:A_BomoSK_comp12706_c1_seq4
137bp
 hypothetical_protein_FF38_07250_[Lucilia_cuprina]
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0042802 F identical protein binding
1896 O_BomoSK11707_3prime_partial:A_BomoSK_comp12707_c0_seq1
1045bp
 PREDICTED:_tetratricopeptide_repeat_protein_21B-like_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
1897 O_BomoSK11708_complete:A_BomoSK_comp12707_c0_seq1
111bp
 PREDICTED:_protein_NATD1_[Amyelois_transitella]
1898 O_BomoSK11709_complete:A_BomoSK_comp12708_c0_seq2
329bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_activator-like_[Amyelois_transitella]
GO:0000159 C protein phosphatase type 2A complex
GO:0000166 F nucleotide binding
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008160 F protein tyrosine phosphatase activator activity
GO:0008601 F protein phosphatase regulator activity
GO:0016853 F isomerase activity
GO:0016887 F ATP hydrolysis activity
GO:0019211 F phosphatase activator activity
GO:0030472 P mitotic spindle organization
GO:0032515 P negative regulation of phosphoprotein phosphatase activity
GO:0032516 P positive regulation of phosphoprotein phosphatase activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034704 C calcium channel complex
GO:0035307 P positive regulation of protein dephosphorylation
GO:0035308 P negative regulation of protein dephosphorylation
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043666 P regulation of phosphoprotein phosphatase activity
GO:0051721 F protein phosphatase 2A binding
GO:0070062 C extracellular exosome
1899 O_BomoSK1170_5prime_partial:A_BomoSK_comp3963_c0_seq1
740bp
 PREDICTED:_uncharacterized_protein_LOC101741686_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
1900 O_BomoSK11710_complete:A_BomoSK_comp12708_c0_seq3
329bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_activator-like_[Amyelois_transitella]
GO:0000159 C protein phosphatase type 2A complex
GO:0000166 F nucleotide binding
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008160 F protein tyrosine phosphatase activator activity
GO:0008601 F protein phosphatase regulator activity
GO:0016853 F isomerase activity
GO:0016887 F ATP hydrolysis activity
GO:0019211 F phosphatase activator activity
GO:0030472 P mitotic spindle organization
GO:0032515 P negative regulation of phosphoprotein phosphatase activity
GO:0032516 P positive regulation of phosphoprotein phosphatase activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034704 C calcium channel complex
GO:0035307 P positive regulation of protein dephosphorylation
GO:0035308 P negative regulation of protein dephosphorylation
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043666 P regulation of phosphoprotein phosphatase activity
GO:0051721 F protein phosphatase 2A binding
GO:0070062 C extracellular exosome
1901 O_BomoSK11711_complete:A_BomoSK_comp12709_c0_seq1
319bp
 Nuclear_RNA_export_factor_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
1902 O_BomoSK11712_complete:A_BomoSK_comp12709_c0_seq2
614bp
 hypothetical_protein_KGM_03155_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
1903 O_BomoSK11713_complete:A_BomoSK_comp12709_c0_seq3
268bp
 hypothetical_protein_KGM_03155_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
1904 O_BomoSK11714_complete:A_BomoSK_comp12710_c0_seq1
430bp
 PREDICTED:_chitinase-3-like_protein_1_[Papilio_xuthus]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008061 F chitin binding
GO:0009612 P response to mechanical stimulus
GO:0010800 P positive regulation of peptidyl-threonine phosphorylation
GO:0030246 F carbohydrate binding
GO:0030324 P lung development
GO:0034612 P response to tumor necrosis factor
GO:0045766 P positive regulation of angiogenesis
GO:0048471 C perinuclear region of cytoplasm
GO:0051216 P cartilage development
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070062 C extracellular exosome
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0070555 P response to interleukin-1
GO:0070741 P response to interleukin-6
GO:0071347 P cellular response to interleukin-1
GO:0071356 P cellular response to tumor necrosis factor
GO:0072606 P interleukin-8 production
1905 O_BomoSK11715_3prime_partial:A_BomoSK_comp12710_c0_seq2
157bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_blastoderm-specific_protein_25D-like,_partial_[Bombyx_mori]
1906 O_BomoSK11716_3prime_partial:A_BomoSK_comp12710_c0_seq3
671bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_blastoderm-specific_protein_25D-like,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000242 C pericentriolar material
GO:0000922 C spindle pole
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0034454 P microtubule anchoring at centrosome
GO:0051642 P centrosome localization
1907 O_BomoSK11717_complete:A_BomoSK_comp12710_c0_seq4
546bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_blastoderm-specific_protein_25D-like,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000242 C pericentriolar material
GO:0000922 C spindle pole
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0034454 P microtubule anchoring at centrosome
GO:0051642 P centrosome localization
1908 O_BomoSK11718_complete:A_BomoSK_comp12710_c0_seq4
109bp
1909 O_BomoSK11719_3prime_partial:A_BomoSK_comp12711_c0_seq1
218bp
 PREDICTED:_PI-PLC_X_domain-containing_protein_3_[Papilio_xuthus]
GO:0004871 F obsolete signal transducer activity
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
1910 O_BomoSK1171_5prime_partial:A_BomoSK_comp3963_c0_seq1
114bp
 unnamed_protein_product,_partial_[Oncorhynchus_mykiss]
1911 O_BomoSK11720_3prime_partial:A_BomoSK_comp12712_c0_seq1
471bp
 PREDICTED:_CTL-like_protein_1_isoform_X2_[Papilio_polytes]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1912 O_BomoSK11721_5prime_partial:A_BomoSK_comp12712_c1_seq1
206bp
 PREDICTED:_CTL-like_protein_1_isoform_X1_[Amyelois_transitella]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1913 O_BomoSK11722_complete:A_BomoSK_comp12712_c1_seq1
102bp
 hypothetical_protein_[Pan_troglodytes]
1914 O_BomoSK11723_5prime_partial:A_BomoSK_comp12712_c1_seq2
205bp
 PREDICTED:_CTL-like_protein_1_isoform_X2_[Amyelois_transitella]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1915 O_BomoSK11724_complete:A_BomoSK_comp12712_c1_seq2
102bp
 hypothetical_protein_[Pan_troglodytes]
1916 O_BomoSK11725_3prime_partial:A_BomoSK_comp12714_c0_seq1
259bp
 PREDICTED:_uncharacterized_protein_LOC106131312_[Amyelois_transitella]
1917 O_BomoSK11726_complete:A_BomoSK_comp12714_c0_seq2
149bp
 PREDICTED:_uncharacterized_protein_LOC106131312_[Amyelois_transitella]
1918 O_BomoSK11727_complete:A_BomoSK_comp12716_c0_seq1
298bp
 PREDICTED:_HMGB_protein_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006338 P chromatin remodeling
GO:0007379 P segment specification
GO:0008134 F transcription factor binding
GO:0008301 F DNA binding, bending
GO:0008348 P negative regulation of antimicrobial humoral response
GO:0017025 F TBP-class protein binding
GO:0017055 P negative regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0032502 P developmental process
GO:0035218 P leg disc development
GO:0043388 P positive regulation of DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
1919 O_BomoSK11728_5prime_partial:A_BomoSK_comp12716_c0_seq1
147bp
1920 O_BomoSK11729_complete:A_BomoSK_comp12717_c0_seq1
308bp
 PREDICTED:_synaptic_vesicle_glycoprotein_2C-like_isoform_X2_[Bombyx_mori]
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