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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1861 O_BomoSK11676_complete:A_BomoSK_comp12698_c0_seq2
105bp
 PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X3_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1862 O_BomoSK11677_complete:A_BomoSK_comp12698_c0_seq3
343bp
 PREDICTED:_nucleoporin-like_protein_2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
1863 O_BomoSK11678_complete:A_BomoSK_comp12698_c0_seq3
308bp
 PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1864 O_BomoSK11679_complete:A_BomoSK_comp12698_c0_seq4
308bp
 PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1865 O_BomoSK1167_5prime_partial:A_BomoSK_comp3960_c0_seq1
143bp
1866 O_BomoSK11680_complete:A_BomoSK_comp12698_c0_seq5
343bp
 PREDICTED:_nucleoporin-like_protein_2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
1867 O_BomoSK11681_complete:A_BomoSK_comp12698_c0_seq6
350bp
 PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1868 O_BomoSK11682_complete:A_BomoSK_comp12698_c0_seq6
343bp
 PREDICTED:_nucleoporin-like_protein_2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
1869 O_BomoSK11683_complete:A_BomoSK_comp12699_c0_seq1
317bp
 PREDICTED:_beta-catenin-like_protein_1_[Papilio_machaon]
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008380 P RNA splicing
1870 O_BomoSK11684_complete:A_BomoSK_comp12699_c0_seq1
223bp
 PREDICTED:_beta-catenin-like_protein_1_[Papilio_machaon]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016445 P somatic diversification of immunoglobulins
GO:0019899 F enzyme binding
GO:0043065 P positive regulation of apoptotic process
1871 O_BomoSK11685_complete:A_BomoSK_comp12699_c0_seq2
554bp
 PREDICTED:_beta-catenin-like_protein_1_[Papilio_machaon]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016445 P somatic diversification of immunoglobulins
GO:0019899 F enzyme binding
GO:0043065 P positive regulation of apoptotic process
1872 O_BomoSK11686_internal:A_BomoSK_comp12701_c0_seq1
315bp
 gag-pol_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1873 O_BomoSK11687_3prime_partial:A_BomoSK_comp12701_c0_seq2
284bp
 gag-pol_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1874 O_BomoSK11688_3prime_partial:A_BomoSK_comp12701_c0_seq3
702bp
 PREDICTED:_uncharacterized_protein_LOC106134085_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1875 O_BomoSK11689_5prime_partial:A_BomoSK_comp12701_c0_seq3
291bp
 hypothetical_protein_RP20_CCG025001_[Aedes_albopictus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1876 O_BomoSK1168_5prime_partial:A_BomoSK_comp3960_c0_seq1
104bp
 hypothetical_protein_EUTSA_v10008658mg_[Eutrema_salsugineum]
1877 O_BomoSK11690_3prime_partial:A_BomoSK_comp12701_c0_seq4
702bp
 PREDICTED:_uncharacterized_protein_LOC106134085_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1878 O_BomoSK11691_complete:A_BomoSK_comp12703_c0_seq1
356bp
 tRNA-splicing_endonuclease_subunit_Sen2_[Papilio_xuthus]
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0016829 F lyase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1879 O_BomoSK11692_complete:A_BomoSK_comp12703_c0_seq1
119bp
 Cmc1_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0046872 F metal ion binding
1880 O_BomoSK11693_complete:A_BomoSK_comp12705_c1_seq1
146bp
 PREDICTED:_dehydrodolichyl_diphosphate_synthase_isoform_X1_[Bombyx_mori]
GO:0002094 F polyprenyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006489 P dolichyl diphosphate biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
1881 O_BomoSK11694_complete:A_BomoSK_comp12705_c1_seq2
285bp
 PREDICTED:_dehydrodolichyl_diphosphate_synthase_isoform_X1_[Bombyx_mori]
GO:0002094 F polyprenyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006489 P dolichyl diphosphate biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
1882 O_BomoSK11695_complete:A_BomoSK_comp12706_c1_seq1
301bp
 hypothetical_protein_RR46_04746_[Papilio_xuthus]
1883 O_BomoSK11696_complete:A_BomoSK_comp12706_c1_seq1
271bp
 PREDICTED:_putative_nuclease_HARBI1_[Solenopsis_invicta]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1884 O_BomoSK11697_complete:A_BomoSK_comp12706_c1_seq1
166bp
 hypothetical_protein_FF38_07250_[Lucilia_cuprina]
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0042802 F identical protein binding
1885 O_BomoSK11698_complete:A_BomoSK_comp12706_c1_seq2
271bp
 PREDICTED:_putative_nuclease_HARBI1_[Solenopsis_invicta]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1886 O_BomoSK11699_complete:A_BomoSK_comp12706_c1_seq2
227bp
 PREDICTED:_deoxynucleoside_kinase-like_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0004797 F thymidine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006165 P nucleoside diphosphate phosphorylation
GO:0006230 P TMP biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019136 F deoxynucleoside kinase activity
GO:0019206 F nucleoside kinase activity
GO:0046939 P nucleotide phosphorylation
GO:0071897 P DNA biosynthetic process
1887 O_BomoSK1169_complete:A_BomoSK_comp3961_c0_seq1
1017bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_presequence_protease,_mitochondrial-like_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1888 O_BomoSK116_complete:A_BomoSK_comp406_c1_seq1
110bp
 PREDICTED:_absent_in_melanoma_1_protein-like_isoform_X2_[Fundulus_heteroclitus]
1889 O_BomoSK11700_complete:A_BomoSK_comp12706_c1_seq2
166bp
 hypothetical_protein_FF38_07250_[Lucilia_cuprina]
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0042802 F identical protein binding
1890 O_BomoSK11701_complete:A_BomoSK_comp12706_c1_seq3
271bp
 PREDICTED:_putative_nuclease_HARBI1_[Solenopsis_invicta]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
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