SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1831 O_BomoSK11649_3prime_partial:A_BomoSK_comp12687_c0_seq2
445bp
 PREDICTED:_uncharacterized_protein_LOC101740889_[Bombyx_mori]
GO:0005515 F protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
1832 O_BomoSK1164_complete:A_BomoSK_comp3957_c0_seq1
241bp
1833 O_BomoSK11650_5prime_partial:A_BomoSK_comp12687_c0_seq2
103bp
 PREDICTED:_zinc_finger_protein_318-like_[Thamnophis_sirtalis]
1834 O_BomoSK11651_3prime_partial:A_BomoSK_comp12688_c0_seq1
206bp
 PREDICTED:_P_protein-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005765 C lysosomal membrane
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007286 P spermatid development
GO:0008283 P cell population proliferation
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030318 P melanocyte differentiation
GO:0033162 C melanosome membrane
GO:0042438 P melanin biosynthetic process
GO:0043473 P pigmentation
GO:0048066 P developmental pigmentation
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
1835 O_BomoSK11652_5prime_partial:A_BomoSK_comp12688_c0_seq1
104bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ethanolaminephosphotransferase_1-like_[Anolis_carolinensis]
1836 O_BomoSK11653_complete:A_BomoSK_comp12688_c0_seq2
206bp
 PREDICTED:_P_protein-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005765 C lysosomal membrane
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007286 P spermatid development
GO:0008283 P cell population proliferation
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030318 P melanocyte differentiation
GO:0033162 C melanosome membrane
GO:0042438 P melanin biosynthetic process
GO:0043473 P pigmentation
GO:0048066 P developmental pigmentation
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
1837 O_BomoSK11654_complete:A_BomoSK_comp12688_c0_seq3
206bp
 PREDICTED:_P_protein-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005765 C lysosomal membrane
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007286 P spermatid development
GO:0008283 P cell population proliferation
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030318 P melanocyte differentiation
GO:0033162 C melanosome membrane
GO:0042438 P melanin biosynthetic process
GO:0043473 P pigmentation
GO:0048066 P developmental pigmentation
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
1838 O_BomoSK11655_3prime_partial:A_BomoSK_comp12688_c0_seq4
206bp
 PREDICTED:_P_protein-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005765 C lysosomal membrane
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007286 P spermatid development
GO:0008283 P cell population proliferation
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030318 P melanocyte differentiation
GO:0033162 C melanosome membrane
GO:0042438 P melanin biosynthetic process
GO:0043473 P pigmentation
GO:0048066 P developmental pigmentation
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
1839 O_BomoSK11656_5prime_partial:A_BomoSK_comp12688_c0_seq4
104bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ethanolaminephosphotransferase_1-like_[Anolis_carolinensis]
1840 O_BomoSK11657_complete:A_BomoSK_comp12689_c0_seq1
749bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_putative_RNA-binding_protein_15_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
1841 O_BomoSK11658_complete:A_BomoSK_comp12689_c0_seq1
107bp
 peptidase_S1_[Rheinheimera_baltica]
1842 O_BomoSK11659_complete:A_BomoSK_comp12689_c0_seq1
102bp
 hypothetical_protein_[Tuber_melanosporum_Mel28]
1843 O_BomoSK1165_complete:A_BomoSK_comp3957_c0_seq2
197bp
 PREDICTED:_calumenin-A-like_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016529 C sarcoplasmic reticulum
GO:0033018 C sarcoplasmic reticulum lumen
GO:0042470 C melanosome
GO:0046872 F metal ion binding
1844 O_BomoSK11660_complete:A_BomoSK_comp12695_c0_seq1
482bp
 PREDICTED:_amino_acid_transporter-like_protein_isoform_X1_[Bombyx_mori]
GO:0005313 F L-glutamate transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006835 P dicarboxylic acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017153 F sodium:dicarboxylate symporter activity
GO:0042995 C cell projection
GO:0055085 P transmembrane transport
GO:0089711 P L-glutamate transmembrane transport
1845 O_BomoSK11661_complete:A_BomoSK_comp12695_c0_seq1
108bp
 oxidoreductase_[Prevotella_sp._10(H)]
1846 O_BomoSK11662_complete:A_BomoSK_comp12696_c0_seq2
522bp
 PREDICTED:_S1_RNA-binding_domain-containing_protein_1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006139 P nucleobase-containing compound metabolic process
1847 O_BomoSK11663_complete:A_BomoSK_comp12696_c0_seq2
291bp
 PREDICTED:_S1_RNA-binding_domain-containing_protein_1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006139 P nucleobase-containing compound metabolic process
1848 O_BomoSK11664_complete:A_BomoSK_comp12696_c0_seq2
116bp
 acetoacetate-CoA_ligase_[Stereum_hirsutum_FP-91666_SS1]
1849 O_BomoSK11665_complete:A_BomoSK_comp12696_c0_seq2
103bp
 alkaline_phosphatase_[Mariniradius_saccharolyticus]
1850 O_BomoSK11666_complete:A_BomoSK_comp12696_c0_seq2
102bp
 hypothetical_protein_[Streptomyces_sp._SPB78]
1851 O_BomoSK11667_complete:A_BomoSK_comp12696_c0_seq3
803bp
 PREDICTED:_S1_RNA-binding_domain-containing_protein_1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006139 P nucleobase-containing compound metabolic process
1852 O_BomoSK11668_complete:A_BomoSK_comp12696_c0_seq3
116bp
 acetoacetate-CoA_ligase_[Stereum_hirsutum_FP-91666_SS1]
1853 O_BomoSK11669_complete:A_BomoSK_comp12696_c0_seq3
103bp
 alkaline_phosphatase_[Mariniradius_saccharolyticus]
1854 O_BomoSK1166_3prime_partial:A_BomoSK_comp3960_c0_seq1
985bp
 putative_G-protein_coupled_receptor_125_[Papilio_machaon]
GO:0001525 P angiogenesis
GO:0001944 P vasculature development
GO:0002040 P sprouting angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:1990791 P dorsal root ganglion development
1855 O_BomoSK11670_5prime_partial:A_BomoSK_comp12697_c0_seq1
296bp
 cryptochrome_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0042622 C photoreceptor outer segment membrane
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:0097381 C photoreceptor disc membrane
1856 O_BomoSK11671_3prime_partial:A_BomoSK_comp12697_c0_seq2
443bp
 cryptochrome_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0042622 C photoreceptor outer segment membrane
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:0097381 C photoreceptor disc membrane
1857 O_BomoSK11672_5prime_partial:A_BomoSK_comp12697_c0_seq2
102bp
 hypothetical_protein_[Desulfospira_joergensenii]
1858 O_BomoSK11673_complete:A_BomoSK_comp12697_c0_seq3
369bp
 cryptochrome_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0042622 C photoreceptor outer segment membrane
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:0097381 C photoreceptor disc membrane
1859 O_BomoSK11674_5prime_partial:A_BomoSK_comp12697_c0_seq3
113bp
 PREDICTED:_methyltransferase-like_protein_4_[Astyanax_mexicanus]
1860 O_BomoSK11675_complete:A_BomoSK_comp12698_c0_seq2
343bp
 PREDICTED:_nucleoporin-like_protein_2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
previous next from show/33939

- SilkBase 1999-2023 -