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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1201 O_BomoSK11081_complete:A_BomoSK_comp12522_c0_seq1
123bp
 hypothetical_protein_[Leptothrix_cholodnii]
1202 O_BomoSK11082_complete:A_BomoSK_comp12522_c0_seq1
106bp
 exonuclease_family_protein,_partial_[Escherichia_coli_DEC10C]
1203 O_BomoSK11083_5prime_partial:A_BomoSK_comp12522_c0_seq2
397bp
 PREDICTED:_dystroglycan_isoform_X4_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0042383 C sarcolemma
GO:0043236 F laminin binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
1204 O_BomoSK11084_complete:A_BomoSK_comp12522_c0_seq2
116bp
 hypothetical_protein_ENH_00048960_[Eimeria_necatrix]
1205 O_BomoSK11085_complete:A_BomoSK_comp12522_c0_seq2
106bp
 exonuclease_family_protein,_partial_[Escherichia_coli_DEC10C]
1206 O_BomoSK11086_complete:A_BomoSK_comp12523_c0_seq1
168bp
 mitochondrial_ribosomal_protein_S25_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
1207 O_BomoSK11087_complete:A_BomoSK_comp12523_c0_seq2
128bp
1208 O_BomoSK11088_complete:A_BomoSK_comp12524_c0_seq1
252bp
 PREDICTED:_post-GPI_attachment_to_proteins_factor_2-like_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006506 P GPI anchor biosynthetic process
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1209 O_BomoSK11089_complete:A_BomoSK_comp12524_c0_seq2
252bp
 PREDICTED:_post-GPI_attachment_to_proteins_factor_2-like_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006506 P GPI anchor biosynthetic process
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1210 O_BomoSK1108_internal:A_BomoSK_comp3887_c0_seq3
358bp
 PREDICTED:_golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
1211 O_BomoSK11090_5prime_partial:A_BomoSK_comp12525_c0_seq1
421bp
 PREDICTED:_nose_resistant_to_fluoxetine_protein_6-like_[Amyelois_transitella]
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
1212 O_BomoSK11091_complete:A_BomoSK_comp12525_c0_seq1
136bp
 PREDICTED:_synaptonemal_complex_protein_2-like_[Pantholops_hodgsonii]
1213 O_BomoSK11092_complete:A_BomoSK_comp12525_c0_seq1
115bp
 hypothetical_protein,_partial_[Sporisorium_scitamineum]
1214 O_BomoSK11093_internal:A_BomoSK_comp12525_c1_seq1
255bp
 PREDICTED:_nose_resistant_to_fluoxetine_protein_6-like_[Amyelois_transitella]
1215 O_BomoSK11094_5prime_partial:A_BomoSK_comp12525_c1_seq1
104bp
 hypothetical_protein_[Methanococcus_voltae]
1216 O_BomoSK11095_internal:A_BomoSK_comp12525_c2_seq1
248bp
 PREDICTED:_nose_resistant_to_fluoxetine_protein_6-like_[Amyelois_transitella]
1217 O_BomoSK11096_complete:A_BomoSK_comp12527_c1_seq1
315bp
 PREDICTED:_mitochondrial_glutamate_carrier_1-like_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005313 F L-glutamate transmembrane transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0015293 F symporter activity
GO:0015813 P L-glutamate transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
GO:0089711 P L-glutamate transmembrane transport
1218 O_BomoSK11097_complete:A_BomoSK_comp12528_c0_seq1
184bp
 PREDICTED:_pseudouridine-5'-phosphatase_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0009117 P nucleotide metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1990738 F pseudouridine 5'-phosphatase activity
1219 O_BomoSK11098_complete:A_BomoSK_comp12528_c0_seq2
230bp
 PREDICTED:_pseudouridine-5'-phosphatase_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0009117 P nucleotide metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1990738 F pseudouridine 5'-phosphatase activity
1220 O_BomoSK11099_complete:A_BomoSK_comp12529_c0_seq1
197bp
 PREDICTED:_phosphatidylglycerophosphatase_and_protein-tyrosine_phosphatase_1_[Amyelois_transitella]
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0008654 P phospholipid biosynthetic process
GO:0008962 F phosphatidylglycerophosphatase activity
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0022008 P neurogenesis
GO:0035335 P peptidyl-tyrosine dephosphorylation
1221 O_BomoSK1109_5prime_partial:A_BomoSK_comp3887_c0_seq3
225bp
1222 O_BomoSK110_internal:A_BomoSK_comp400_c0_seq1
185bp
 PREDICTED:_homeobox_protein_B-H1-like_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007455 P eye-antennal disc morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007601 P visual perception
GO:0008052 P sensory organ boundary specification
GO:0008057 P eye pigment granule organization
GO:0008407 P chaeta morphogenesis
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050896 P response to stimulus
1223 O_BomoSK11100_complete:A_BomoSK_comp12529_c0_seq2
122bp
 PREDICTED:_phosphatidylglycerophosphatase_and_protein-tyrosine_phosphatase_1_[Papilio_polytes]
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0008654 P phospholipid biosynthetic process
GO:0008962 F phosphatidylglycerophosphatase activity
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0022008 P neurogenesis
GO:0035335 P peptidyl-tyrosine dephosphorylation
1224 O_BomoSK11101_internal:A_BomoSK_comp12530_c0_seq1
278bp
 PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Amyelois_transitella]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016579 P protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0051301 P cell division
1225 O_BomoSK11102_internal:A_BomoSK_comp12530_c0_seq2
282bp
 PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Amyelois_transitella]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016579 P protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0051301 P cell division
1226 O_BomoSK11103_complete:A_BomoSK_comp12530_c0_seq3
348bp
 PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Amyelois_transitella]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016579 P protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0051301 P cell division
1227 O_BomoSK11104_3prime_partial:A_BomoSK_comp12530_c0_seq4
123bp
 PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Papilio_polytes]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016579 P protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0051301 P cell division
1228 O_BomoSK11105_3prime_partial:A_BomoSK_comp12530_c0_seq5
123bp
 PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Papilio_polytes]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016579 P protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0051301 P cell division
1229 O_BomoSK11106_5prime_partial:A_BomoSK_comp12530_c0_seq5
107bp
 PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_2_[Amyelois_transitella]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016579 P protein deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0051301 P cell division
1230 O_BomoSK11107_complete:A_BomoSK_comp12531_c0_seq1
578bp
 PREDICTED:_AP-2_complex_subunit_alpha_[Papilio_machaon]
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030131 C clathrin adaptor complex
GO:0048488 P synaptic vesicle endocytosis
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