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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1141 O_BomoSK11027_3prime_partial:A_BomoSK_comp12487_c1_seq5
240bp
 PREDICTED:_uncharacterized_protein_LOC101735885_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1142 O_BomoSK11028_complete:A_BomoSK_comp12488_c0_seq1
656bp
 PREDICTED:_carnitine_O-palmitoyltransferase_2,_mitochondrial,_partial_[Papilio_xuthus]
GO:0004095 F carnitine O-palmitoyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
1143 O_BomoSK11029_5prime_partial:A_BomoSK_comp12489_c0_seq1
519bp
 PREDICTED:_large_neutral_amino_acids_transporter_small_subunit_2_[Amyelois_transitella]
GO:0003333 P amino acid transmembrane transport
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015179 F L-amino acid transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015807 P L-amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:1902475 P L-alpha-amino acid transmembrane transport
1144 O_BomoSK1102_complete:A_BomoSK_comp3880_c0_seq1
516bp
 PREDICTED:_ATP-dependent_RNA_helicase_p62-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031047 P gene silencing by RNA
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050688 P regulation of defense response to virus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1145 O_BomoSK11030_complete:A_BomoSK_comp12489_c0_seq1
128bp
 hypothetical_protein_SCLCIDRAFT_229067_[Scleroderma_citrinum_Foug_A]
1146 O_BomoSK11031_complete:A_BomoSK_comp12490_c0_seq1
669bp
 PREDICTED:_ADP-ribosylation_factor-binding_protein_GGA1_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030131 C clathrin adaptor complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0045732 P positive regulation of protein catabolic process
GO:1901998 P toxin transport
1147 O_BomoSK11032_3prime_partial:A_BomoSK_comp12492_c0_seq1
327bp
 PREDICTED:_myb-like_protein_X_isoform_X3_[Bombyx_mori]
1148 O_BomoSK11033_5prime_partial:A_BomoSK_comp12492_c0_seq1
119bp
1149 O_BomoSK11034_3prime_partial:A_BomoSK_comp12492_c0_seq2
334bp
 PREDICTED:_histone_H3.v1-like_isoform_X4_[Bombyx_mori]
1150 O_BomoSK11035_5prime_partial:A_BomoSK_comp12492_c0_seq2
119bp
1151 O_BomoSK11036_internal:A_BomoSK_comp12492_c0_seq3
261bp
 PREDICTED:_myb-like_protein_X_isoform_X1_[Bombyx_mori]
1152 O_BomoSK11037_5prime_partial:A_BomoSK_comp12492_c0_seq3
119bp
1153 O_BomoSK11038_complete:A_BomoSK_comp12493_c0_seq1
1327bp
 PREDICTED:_uncharacterized_protein_LOC106115983_[Papilio_xuthus]
1154 O_BomoSK11039_complete:A_BomoSK_comp12497_c0_seq2
291bp
 putative_transcription_factor_TFIIH-subunit_[Danaus_plexippus]
GO:0000439 C transcription factor TFIIH core complex
GO:0003684 F damaged DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006412 P translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008135 F translation factor activity, RNA binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
1155 O_BomoSK1103_internal:A_BomoSK_comp3887_c0_seq1
114bp
1156 O_BomoSK11040_complete:A_BomoSK_comp12498_c0_seq1
301bp
 PREDICTED:_uncharacterized_protein_LOC105390855_[Plutella_xylostella]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1157 O_BomoSK11041_complete:A_BomoSK_comp12501_c0_seq1
441bp
 PREDICTED:_uncharacterized_protein_LOC106130039_isoform_X1_[Amyelois_transitella]
1158 O_BomoSK11042_complete:A_BomoSK_comp12501_c0_seq1
102bp
1159 O_BomoSK11043_5prime_partial:A_BomoSK_comp12501_c0_seq1
100bp
 dihydroorotate_dehydrogenase_2_[Halococcus_sediminicola]
1160 O_BomoSK11044_complete:A_BomoSK_comp12502_c0_seq1
771bp
 PREDICTED:_atlastin-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0051260 P protein homooligomerization
1161 O_BomoSK11045_complete:A_BomoSK_comp12504_c1_seq1
339bp
 DnaJ-8_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1162 O_BomoSK11046_5prime_partial:A_BomoSK_comp12504_c1_seq1
107bp
 beta-N-acetylglucosaminidase_[Lysinibacillus_macroides]
1163 O_BomoSK11047_3prime_partial:A_BomoSK_comp12505_c0_seq1
323bp
 casein_kinase_I_alpha_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000902 P cell morphogenesis
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008360 P regulation of cell shape
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030529 C ribonucleoprotein complex
GO:0030877 C beta-catenin destruction complex
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0045095 C keratin filament
GO:0045104 P intermediate filament cytoskeleton organization
GO:0051301 P cell division
GO:0072372 C cilium
GO:1904424 P regulation of GTP binding
1164 O_BomoSK11048_complete:A_BomoSK_comp12505_c0_seq1
169bp
1165 O_BomoSK11049_5prime_partial:A_BomoSK_comp12505_c0_seq1
130bp
 hypothetical_protein_V493_00707,_partial_[Pseudogymnoascus_sp._VKM_F-4281_(FW-2241)]
1166 O_BomoSK1104_internal:A_BomoSK_comp3887_c0_seq1
113bp
 PREDICTED:_golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
1167 O_BomoSK11050_3prime_partial:A_BomoSK_comp12505_c0_seq2
324bp
 PREDICTED:_casein_kinase_I_alpha_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000902 P cell morphogenesis
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008360 P regulation of cell shape
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030529 C ribonucleoprotein complex
GO:0030877 C beta-catenin destruction complex
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0045095 C keratin filament
GO:0045104 P intermediate filament cytoskeleton organization
GO:0051301 P cell division
GO:0072372 C cilium
GO:1904424 P regulation of GTP binding
1168 O_BomoSK11051_complete:A_BomoSK_comp12505_c0_seq2
169bp
1169 O_BomoSK11052_5prime_partial:A_BomoSK_comp12505_c0_seq2
130bp
 hypothetical_protein_V493_00707,_partial_[Pseudogymnoascus_sp._VKM_F-4281_(FW-2241)]
1170 O_BomoSK11053_complete:A_BomoSK_comp12507_c0_seq2
145bp
 hypothetical_protein_KGM_15207_[Danaus_plexippus]
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