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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1111 O_BomoSK10_5prime_partial:A_BomoSK_comp36_c0_seq1
105bp
 flagellin_[Burkholderia_territorii]
1112 O_BomoSK11000_complete:A_BomoSK_comp12479_c0_seq1
189bp
1113 O_BomoSK11001_complete:A_BomoSK_comp12479_c0_seq1
131bp
1114 O_BomoSK11002_5prime_partial:A_BomoSK_comp12479_c0_seq2
270bp
 AF078161_1_lacunin_[Manduca_sexta]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
1115 O_BomoSK11003_3prime_partial:A_BomoSK_comp12479_c0_seq2
236bp
1116 O_BomoSK11004_complete:A_BomoSK_comp12479_c0_seq2
134bp
 tRNA(Ile)-lysidine_synthetase_[Corynebacterium_sp._JCB]
1117 O_BomoSK11005_complete:A_BomoSK_comp12480_c0_seq1
944bp
 transient_receptor_potential_cation_channel_protein_painless_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005227 F calcium activated cation channel activity
GO:0005262 F calcium channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0007620 P copulation
GO:0007631 P feeding behavior
GO:0007638 P mechanosensory behavior
GO:0008016 P regulation of heart contraction
GO:0008049 P male courtship behavior
GO:0009408 P response to heat
GO:0009612 P response to mechanical stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019233 P sensory perception of pain
GO:0034704 C calcium channel complex
GO:0042048 P olfactory behavior
GO:0043052 P thermotaxis
GO:0045924 P regulation of female receptivity
GO:0048060 P negative gravitaxis
GO:0048266 P behavioral response to pain
GO:0050896 P response to stimulus
GO:0050960 P detection of temperature stimulus involved in thermoception
GO:0050965 P detection of temperature stimulus involved in sensory perception of pain
GO:0050966 P detection of mechanical stimulus involved in sensory perception of pain
GO:0050974 P detection of mechanical stimulus involved in sensory perception
GO:0055085 P transmembrane transport
GO:0070588 P calcium ion transmembrane transport
1118 O_BomoSK11006_complete:A_BomoSK_comp12481_c0_seq1
150bp
 PREDICTED:_exosome_complex_exonuclease_RRP44_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043488 P regulation of mRNA stability
GO:0043547 P positive regulation of GTPase activity
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
1119 O_BomoSK11007_complete:A_BomoSK_comp12483_c1_seq1
255bp
 PREDICTED:_gamma-interferon-inducible_lysosomal_thiol_reductase-like_[Plutella_xylostella]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0016491 F oxidoreductase activity
GO:0016667 F oxidoreductase activity, acting on a sulfur group of donors
GO:0042590 P antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0055114 P obsolete oxidation-reduction process
1120 O_BomoSK11008_3prime_partial:A_BomoSK_comp12484_c0_seq1
181bp
 PREDICTED:_regulator_of_gene_activity_isoform_X4_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0017148 P negative regulation of translation
GO:0019233 P sensory perception of pain
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0046331 P lateral inhibition
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
1121 O_BomoSK11009_3prime_partial:A_BomoSK_comp12484_c0_seq2
200bp
 PREDICTED:_regulator_of_gene_activity_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0017148 P negative regulation of translation
GO:0019233 P sensory perception of pain
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0046331 P lateral inhibition
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
1122 O_BomoSK1100_5prime_partial:A_BomoSK_comp3879_c0_seq1
219bp
 hypothetical_protein_KGM_12837_[Danaus_plexippus]
GO:0001649 P osteoblast differentiation
GO:0002062 P chondrocyte differentiation
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0030992 C intraciliary transport particle B
GO:0035058 P non-motile cilium assembly
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060271 P cilium assembly
GO:0060349 P bone morphogenesis
GO:2000051 P negative regulation of non-canonical Wnt signaling pathway
1123 O_BomoSK11010_3prime_partial:A_BomoSK_comp12485_c0_seq1
601bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006979 P response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
1124 O_BomoSK11011_5prime_partial:A_BomoSK_comp12485_c0_seq1
149bp
 putative_hydrolase_[Sinorhizobium_meliloti_RU11/001]
1125 O_BomoSK11012_3prime_partial:A_BomoSK_comp12485_c0_seq2
513bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006979 P response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
1126 O_BomoSK11013_5prime_partial:A_BomoSK_comp12485_c0_seq2
149bp
 putative_hydrolase_[Sinorhizobium_meliloti_RU11/001]
1127 O_BomoSK11014_3prime_partial:A_BomoSK_comp12485_c0_seq3
473bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006979 P response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
1128 O_BomoSK11015_5prime_partial:A_BomoSK_comp12485_c0_seq3
149bp
 putative_hydrolase_[Sinorhizobium_meliloti_RU11/001]
1129 O_BomoSK11016_complete:A_BomoSK_comp12485_c0_seq3
145bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
1130 O_BomoSK11017_complete:A_BomoSK_comp12485_c0_seq3
121bp
 hypothetical_protein_OCBIM_22005882mg_[Octopus_bimaculoides]
1131 O_BomoSK11018_3prime_partial:A_BomoSK_comp12485_c0_seq4
473bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006979 P response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
1132 O_BomoSK11019_5prime_partial:A_BomoSK_comp12485_c0_seq4
149bp
 putative_hydrolase_[Sinorhizobium_meliloti_RU11/001]
1133 O_BomoSK1101_internal:A_BomoSK_comp3879_c0_seq2
173bp
 PREDICTED:_intraflagellar_transport_protein_80_homolog_isoform_X2_[Amyelois_transitella]
GO:0001649 P osteoblast differentiation
GO:0002062 P chondrocyte differentiation
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0030992 C intraciliary transport particle B
GO:0035058 P non-motile cilium assembly
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060271 P cilium assembly
GO:0060349 P bone morphogenesis
GO:2000051 P negative regulation of non-canonical Wnt signaling pathway
1134 O_BomoSK11020_complete:A_BomoSK_comp12485_c0_seq4
121bp
 hypothetical_protein_OCBIM_22005882mg_[Octopus_bimaculoides]
1135 O_BomoSK11021_3prime_partial:A_BomoSK_comp12486_c0_seq1
500bp
 PREDICTED:_protein-methionine_sulfoxide_oxidase_mical3a-like_isoform_X1_[Bombyx_mori]
1136 O_BomoSK11022_complete:A_BomoSK_comp12486_c0_seq1
110bp
 hypothetical_protein_[Clostridium_sp._KNHs214]
1137 O_BomoSK11023_complete:A_BomoSK_comp12487_c1_seq1
183bp
 PREDICTED:_uncharacterized_protein_LOC101735885_[Bombyx_mori]
1138 O_BomoSK11024_complete:A_BomoSK_comp12487_c1_seq2
252bp
 PREDICTED:_uncharacterized_protein_LOC101735885_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001161 F intronic transcription regulatory region sequence-specific DNA binding
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001953 P negative regulation of cell-matrix adhesion
GO:0002376 P immune system process
GO:0002467 P germinal center formation
GO:0002829 P negative regulation of type 2 immune response
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006954 P inflammatory response
GO:0006974 P cellular response to DNA damage stimulus
GO:0007266 P Rho protein signal transduction
GO:0007283 P spermatogenesis
GO:0008104 P protein localization
GO:0008285 P negative regulation of cell population proliferation
GO:0030036 P actin cytoskeleton organization
GO:0030183 P B cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0030890 P positive regulation of B cell proliferation
GO:0031065 P positive regulation of histone deacetylation
GO:0031490 F chromatin DNA binding
GO:0032764 P negative regulation of mast cell cytokine production
GO:0035024 P negative regulation of Rho protein signal transduction
GO:0042092 P type 2 immune response
GO:0042127 P regulation of cell population proliferation
GO:0043065 P positive regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043087 P regulation of GTPase activity
GO:0043380 P regulation of memory T cell differentiation
GO:0043565 F sequence-specific DNA binding
GO:0045596 P negative regulation of cell differentiation
GO:0045629 P negative regulation of T-helper 2 cell differentiation
GO:0045666 P positive regulation of neuron differentiation
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048294 P negative regulation of isotype switching to IgE isotypes
GO:0048821 P erythrocyte development
GO:0050727 P regulation of inflammatory response
GO:0051272 P positive regulation of cellular component movement
GO:2000773 P negative regulation of cellular senescence
1139 O_BomoSK11025_complete:A_BomoSK_comp12487_c1_seq3
101bp
 PREDICTED:_uncharacterized_protein_LOC101735885_[Bombyx_mori]
1140 O_BomoSK11026_complete:A_BomoSK_comp12487_c1_seq4
183bp
 PREDICTED:_uncharacterized_protein_LOC101735885_[Bombyx_mori]
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